Plasmid OW968010.1

Sequence

Nucleotide Information

Accession OW968010.1
Description Klebsiella pneumoniae isolate 11 genome assembly, plasmid: P3
Source insd
Topology circular
Length 50985 bp
GC Content 0.50 %
Created at NCBI May 20, 2022



Assembly

Genome Data Information

Accession GCA_905330625.2
Assembly Coverage 131


Biosample

Curated Collection Information
Accession 22316831

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Spain
Original Query Type name
Coordinates (Lat/Lon) 39.33/-4.84
Address Spain

ECOSYSTEM
Original Query Homo sapiens,Hospital Universitario Ramon y Cajal (Madrid)
Classification anthropogenic,hospital,host_associated,location
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP097425.1 See Comparison
OW959934.1 See Comparison
OW969732.1 See Comparison
OW969681.1 See Comparison
OW968134.1 See Comparison
OW968094.1 See Comparison
OW968048.1 See Comparison
OW968040.1 See Comparison
OW967994.1 See Comparison
OW967864.1 See Comparison
OW967860.1 See Comparison
OW966975.1 See Comparison
OW967303.1 See Comparison
OW848875.1 See Comparison
OW848824.1 See Comparison
OW848810.1 See Comparison
OW848793.1 See Comparison
OW968048.1 See Comparison
NZ_CP097425.1 See Comparison
OW959934.1 See Comparison
OW969732.1 See Comparison
OW969681.1 See Comparison
OW968134.1 See Comparison
OW968094.1 See Comparison
OW968040.1 See Comparison
OW967994.1 See Comparison
OW967864.1 See Comparison
OW967860.1 See Comparison
OW966975.1 See Comparison
OW848810.1 See Comparison
OW967303.1 See Comparison
OW848875.1 See Comparison
OW848793.1 See Comparison
OW848824.1 See Comparison
OW967994.1 See Comparison
NZ_CP097425.1 See Comparison
OW959934.1 See Comparison
OW968134.1 See Comparison
OW968094.1 See Comparison
OW967864.1 See Comparison
OW967860.1 See Comparison
OW966975.1 See Comparison
OW967303.1 See Comparison
OW848875.1 See Comparison
OW968134.1 See Comparison
OW968094.1 See Comparison
OW968048.1 See Comparison
OW968040.1 See Comparison
OW969732.1 See Comparison
OW969681.1 See Comparison
OW968048.1 See Comparison
OW968040.1 See Comparison
OW967994.1 See Comparison
OW848824.1 See Comparison
OW848810.1 See Comparison
OW848793.1 See Comparison
NZ_CP097425.1 See Comparison
OW959934.1 See Comparison
OW969732.1 See Comparison
OW848824.1 See Comparison
OW967864.1 See Comparison
OW967860.1 See Comparison
OW966975.1 See Comparison
OW967303.1 See Comparison
OW848875.1 See Comparison
OW848810.1 See Comparison
OW959934.1 See Comparison
OW848793.1 See Comparison
OW969681.1 See Comparison
OW968010.1 See Comparison
OW969732.1 See Comparison
OW967860.1 See Comparison
OW966975.1 See Comparison
NZ_CP097425.1 See Comparison
OW969681.1 See Comparison
OW968134.1 See Comparison
OW968094.1 See Comparison
OW968048.1 See Comparison
OW968040.1 See Comparison
OW967994.1 See Comparison
OW967303.1 See Comparison
OW967864.1 See Comparison
OW848793.1 See Comparison
OW848875.1 See Comparison
OW967994.1 See Comparison
NZ_CP097425.1 See Comparison
OW959934.1 See Comparison
OW969681.1 See Comparison
OW968094.1 See Comparison
OW848824.1 See Comparison
OW848810.1 See Comparison
OW969732.1 See Comparison
OW967864.1 See Comparison
OW968134.1 See Comparison
OW967303.1 See Comparison
OW968048.1 See Comparison
OW968040.1 See Comparison
OW967860.1 See Comparison
OW966975.1 See Comparison
OW848824.1 See Comparison
OW848810.1 See Comparison
OW848875.1 See Comparison
OW848793.1 See Comparison
OW969732.1 See Comparison
NZ_CP097425.1 See Comparison
OW959934.1 See Comparison
OW969681.1 See Comparison
OW968094.1 See Comparison
OW968048.1 See Comparison
OW968040.1 See Comparison
OW968134.1 See Comparison
OW848875.1 See Comparison
OW967994.1 See Comparison
OW967864.1 See Comparison
OW967860.1 See Comparison
OW966975.1 See Comparison
OW967303.1 See Comparison
OW848824.1 See Comparison
OW848810.1 See Comparison
OW848793.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
rgicatB3copy
rgiAAC(6')-Ib-cr6copy
amrfinderplusaac(3)-IIecopy
amrfinderplusqnrB1copy
amrfinderplusaac(6')-Ib-cr5copy
amrfinderplusblaOXA-1copy
PGAGhypothetical proteincopy
PGAGTyrosine recombinase XerDcopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 64 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
Loading...
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
Loading...
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
Loading...
NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000204__CP008701_00115IncR4965750552minus99.44210001626
relaxaseNC_015599_00019MOBF3338436560minus99.7179802031
mate-pair-formationNC_022375_00024MPF_T3656338089minus99.8041000996
oriTNZ_CP013834MOBF3856938827minus97.2971003.82e-121440
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 4 of 4 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
Loading...
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2