Plasmid OW967360.1
Sequence
Nucleotide Information
| Accession | OW967360.1 |
|---|---|
| Description | Klebsiella pneumoniae isolate 11 genome assembly, plasmid: P1 |
| Source | insd |
| Topology | circular |
| Length | 202877 bp |
| GC Content | 0.53 % |
| Created at NCBI | May 19, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 22316908 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Spain |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 39.33/-4.84 |
| Address | Spain |
ECOSYSTEM
| Original Query | Homo sapiens,Hospital Universitario Marques de Valdecilla (Santander) |
|---|---|
| Classification | anthropogenic,hospital,host_associated,location |
| Host-associated Taxon |
|
DISEASE
| Original Query | diseased |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Identical Plasmids
100% Sequence Identity
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Sequence
- Accession: OW968384.1
- Description: Klebsiella pneumoniae isolate 11 genome assembly, plasmid: P1
- Source: insd
- Created at NCBI: May 20, 2022
-
Host Taxonomy
Assigned Host: Klebsiella pneumoniae (573)- Superkingdom : Bacteria (2)
- Phylum : Pseudomonadota (1224)
- Class : Gammaproteobacteria (1236)
- Order : Enterobacterales (91347)
- Family : Enterobacteriaceae (543)
- Genus : Klebsiella (570)
- Species : Klebsiella_pneumoniae (573)
- Strain:
-
Biosample
Accession: 22316904 - GEOGRAPHICAL INFORMATION
- Original Query: Spain
- Original Query Type: name
- Address: Spain
- Coordinates (Lat/Lon): 39.33/-4.84
- ECOSYSTEM
- Original Query: Homo sapiens,Hospital Universitario Marques de Valdecilla (Santander)
- Classification: anthropogenic,hospital,host_associated,location
- Host-associated Taxon:
- Homo sapiens (9606)
- DISEASE
- Original Query: diseased
- DOID/SYMP:
- Disease (DOID:4 ) A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
Visualization
Plasmid Visualization
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| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | pcoR | copy | ||
| amrfinderplus | pcoD | copy | ||
| amrfinderplus | pcoS | copy | ||
| amrfinderplus | merT | copy | ||
| amrfinderplus | silR | copy | ||
| amrfinderplus | pcoA | copy | ||
| amrfinderplus | silF | copy | ||
| amrfinderplus | merE | copy | ||
| amrfinderplus | pcoB | copy | ||
| amrfinderplus | pcoC | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 241 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000107__CP014778_00094 | IncFIB | 1 | 1011 | plus | 90.307 | 100 | 0 | 1325 |
| replicon | CP017721_00179 | rep_cluster_2183 | 133467 | 134294 | minus | 81.928 | 96 | 0 | 699 |
| replicon | 000132__HG969996 | IncFII | 134329 | 134563 | plus | 99.574 | 100 | 7.44e-118 | 429 |
| mate-pair-formation | NC_019155_00032 | MPF_F | 150421 | 153264 | minus | 99.895 | 99 | 0 | 1853 |
| mate-pair-formation | NC_019165_00034 | MPF_F | 153267 | 154634 | minus | 99.781 | 100 | 0 | 842 |
| mate-pair-formation | NC_021654_00016 | MPF_F | 157434 | 159437 | minus | 100 | 100 | 0 | 1292 |
| mate-pair-formation | NC_019389_00080 | MPF_F | 159437 | 160072 | minus | 96.698 | 100 | 3.2499999999999997e-135 | 424 |
| mate-pair-formation | NC_022609_00081 | MPF_F | 160088 | 161077 | minus | 95.758 | 100 | 0 | 666 |
| mate-pair-formation | NC_014312_00128 | MPF_F | 161097 | 161714 | minus | 98.544 | 98 | 5.21e-121 | 384 |
| mate-pair-formation | NC_021502_00131 | MPF_T | 162106 | 164742 | minus | 96.246 | 100 | 0 | 1758 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 14 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |