Plasmid OW848804.1

Sequence

Nucleotide Information

Accession OW848804.1
Description Klebsiella pneumoniae isolate 11 genome assembly, plasmid: P1
Source insd
Topology circular
Length 227377 bp
GC Content 0.53 %
Created at NCBI May 14, 2022



Assembly

Genome Data Information

Accession GCA_905218905.2
Assembly Coverage 402


Biosample

Curated Collection Information
Accession 22316589

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Spain
Original Query Type name
Coordinates (Lat/Lon) 39.33/-4.84
Address Spain

ECOSYSTEM
Original Query Homo sapiens,Hospital Universitario Gregorio Maranon (Madrid)
Classification host_associated,location
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP131907.1 See Comparison
OW848808.1 See Comparison
OW970311.1 See Comparison
OW969901.1 See Comparison
OW969862.1 See Comparison
OW969854.1 See Comparison
OW969850.1 See Comparison
OW969794.1 See Comparison
OW967862.1 See Comparison
OW848902.1 See Comparison
OW848873.1 See Comparison
NZ_CP131907.1 See Comparison
NZ_CP082155.1 See Comparison
OW848808.1 See Comparison
OW970311.1 See Comparison
OW969901.1 See Comparison
OW969862.1 See Comparison
OW969854.1 See Comparison
OW969850.1 See Comparison
OW969794.1 See Comparison
OW848902.1 See Comparison
OW848873.1 See Comparison
NZ_CP131907.1 See Comparison
NZ_CP082155.1 See Comparison
OW967862.1 See Comparison
OW969850.1 See Comparison
OW970311.1 See Comparison
OW969794.1 See Comparison
OW969901.1 See Comparison
OW969862.1 See Comparison
OW969854.1 See Comparison
OW848902.1 See Comparison
OW967862.1 See Comparison
NZ_CP082155.1 See Comparison
OW848873.1 See Comparison
OW848808.1 See Comparison
NZ_CP082155.1 See Comparison
OW969794.1 See Comparison
OW967862.1 See Comparison
OW848873.1 See Comparison
OW848808.1 See Comparison
NZ_CP131907.1 See Comparison
OW970311.1 See Comparison
OW969901.1 See Comparison
OW969862.1 See Comparison
OW969854.1 See Comparison
OW969850.1 See Comparison
OW848902.1 See Comparison
OW848873.1 See Comparison
NZ_CP131907.1 See Comparison
OW969794.1 See Comparison
OW848902.1 See Comparison
OW970311.1 See Comparison
OW969901.1 See Comparison
OW969862.1 See Comparison
OW969854.1 See Comparison
OW969850.1 See Comparison
OW967862.1 See Comparison
OW970311.1 See Comparison
NZ_CP131907.1 See Comparison
OW969901.1 See Comparison
OW969862.1 See Comparison
OW969854.1 See Comparison
OW969850.1 See Comparison
OW969794.1 See Comparison
OW848808.1 See Comparison
OW848804.1 See Comparison
NZ_CP082155.1 See Comparison
OW967862.1 See Comparison
OW848902.1 See Comparison
OW848873.1 See Comparison
OW848808.1 See Comparison
NZ_CP082155.1 See Comparison
OW967862.1 See Comparison
OW848873.1 See Comparison
NZ_CP131907.1 See Comparison
OW970311.1 See Comparison
OW969901.1 See Comparison
OW969862.1 See Comparison
OW969854.1 See Comparison
OW969850.1 See Comparison
OW969794.1 See Comparison
OW848902.1 See Comparison
OW848808.1 See Comparison
NZ_CP082155.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
rgiqacEdelta1copy
rgiMrxcopy
amrfinderpluspcoRcopy
amrfinderpluspcoDcopy
amrfinderpluspcoScopy
amrfinderplusmerTcopy
amrfinderplusmph(A)copy
amrfinderplussilFcopy
amrfinderpluspcoBcopy
amrfinderpluspcoAcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 278 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_021502_00150MPF_T170797173103minus97.79210001432
mate-pair-formationNC_019155_00032MPF_F174923177766minus99.8959901853
mate-pair-formationNC_019165_00034MPF_F177769179136minus99.7811000842
mate-pair-formationNC_021654_00016MPF_F181936183939minus10010001292
mate-pair-formationNC_019389_00080MPF_F183939184574minus96.6981003.2499999999999997e-135424
mate-pair-formationNC_022609_00081MPF_F184590185579minus95.7581000666
mate-pair-formationNC_014312_00128MPF_F185599186216minus98.544985.21e-121384
mate-pair-formationNC_021502_00131MPF_T186608189244minus96.24610001758
mate-pair-formationNC_021654_00004MPF_F191881192447minus1001002.63e-122386
mate-pair-formationNC_023332_00154MPF_F193062194483minus99.5781000789
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 17 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2