Plasmid OU015326.1

Sequence

Nucleotide Information

Accession OU015326.1
Description Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00005182 genome assembly, plasmid: P01
Source insd
Topology circular
Length 216909 bp
GC Content 0.46 %
Created at NCBI May 12, 2021



Assembly

Genome Data Information

Accession GCA_907163165.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 19150119

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Australia
Original Query Type name
Coordinates (Lat/Lon) -24.78/134.76
Address Australia

ECOSYSTEM
Original Query Homo sapiens,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusmerCcopy
amrfinderplusterDcopy
amrfinderplusterZcopy
amrfinderplusterWcopy
amrfinderplusdfrA5copy
amrfinderplustet(A)copy
rgiBrucella suis mprFcopy
rgiqacEdelta1copy
amrfinderplusmerTcopy
MOB-typerrep_cluster_1088copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 20 entries



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000340__KU353730rep_cluster_1088135257136219minus99.79210001768
repliconBX664015IncHI2A191519192148minus99.52410001147
relaxaseNC_012555_00231MOBH3835241495minus99.14110002122
mate-pair-formationNC_005211_00207MPF_F3626838349minus99.85610001421
mate-pair-formationNC_005211_00200MPF_F4642547837plus1001000933
mate-pair-formationNC_005211_00030MPF_F159858160913minus99.716990734
mate-pair-formationNC_021845_00017MPF_F161055162563minus98.8071000988
mate-pair-formationNC_005211_00012MPF_T180726183404minus10010001873
mate-pair-formationNC_009838_00006MPF_F187545188813minus99.7641000800
mate-pair-formationNC_005211_00005MPF_F188816189601minus1001002.33e-172533
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 11 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2