Plasmid NZ_OZ040671.1

Sequence

Nucleotide Information

Accession NZ_OZ040671.1
Description Escherichia coli isolate 30821_1#117 plasmid 3, complete sequence
Source refseq
Topology circular
Length 86598 bp
GC Content 0.50 %
Created at NCBI May 15, 2024



Biosample

Curated Collection Information
Accession 19793519

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query None
Original Query Type None
Coordinates (Lat/Lon)
Address None

ECOSYSTEM
Original Query None
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_OZ040671.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGhypothetical proteincopy
PGAGrepAcopy
PGAGconjugal transfer protein TraAcopy
PGAGtranscription termination/antitermination NusG family proteincopy
PGAGconjugal transfer protein TraCcopy
PGAGtraDcopy
PGAGPilI type IV pilus biogenesis proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGpilLcopy
SourceElement NameDisplaySequenceFavorite
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconMG764547IncI-gamma/K115792610minus10010001906
relaxaseNC_019097MOBP5379956492minus95.2129901685
mate-pair-formationNC_019097_00085MPF_I2564626461plus99.6321001.02e-177549
mate-pair-formationNZ_CM001473_00069MPF_I3233732681plus91.3791001.6699999999999998e-54189
mate-pair-formationNC_022267_00069MPF_I3268133328plus98.148916.16e-142445
mate-pair-formationNC_019097_00075MPF_I3338434364plus99.6941000656
mate-pair-formationNC_015965_00072MPF_I3565936360plus99.5731004.56e-153477
mate-pair-formationNC_023290_00086MPF_I3636336887plus99.4291003.43e-100322
mate-pair-formationNC_019111_00038MPF_I3694137342plus97.7611001.18e-51181
mate-pair-formationNC_022267_00057MPF_I4209643295plus99.251000769
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 12 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2