Plasmid NZ_OY978498.1

Sequence

Nucleotide Information

Accession NZ_OY978498.1
Description Klebsiella pneumoniae strain KP36482022BGR isolate KP36482022 plasmid P_KP36482022_4, complete sequence
Source refseq
Topology circular
Length 4473 bp
GC Content 0.44 %
Created at NCBI Dec. 14, 2023



Assembly

Genome Data Information

Accession GCF_963854865.1
Assembly Coverage 76


Biosample

Curated Collection Information
Accession 38661560

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 43.225887N;27.936721E
Original Query Type coordinates
Coordinates (Lat/Lon) 43.23/27.94
Address МБАЛ Света Марина, Georgi Kitov str., м-т Сотира, Приморски, Varna, 9005, Bulgaria

ECOSYSTEM
Original Query Homo sapiens,human urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample




Identical Plasmids

100% Sequence Identity

  • Sequence
    • Accession: NZ_OY978176.1
    • Description: Klebsiella pneumoniae strain KP31122023BGR isolate KP31122023 plasmid P_KP31122023_5, complete sequence
    • Source: refseq
    • Created at NCBI: Dec. 14, 2023

  • Host Taxonomy
    Assigned Host: Klebsiella pneumoniae (573)
  • Biosample
    Accession: 38661559
  • GEOGRAPHICAL INFORMATION
    • Original Query: 43.225887N;27.936721E
    • Original Query Type: coordinates
    • Address: МБАЛ Света Марина, Georgi Kitov str., м-т Сотира, Приморски, Varna, 9005, Bulgaria
    • Coordinates (Lat/Lon): 43.23/27.94
  • ECOSYSTEM
    • Original Query: Homo sapiens,human urine
    • Classification: host_associated,urinary_system
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: diseased
    • DOID/SYMP:
      • Disease (DOID:4 )
        • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

    • Visualization

    PNG JSON

  • Sequence
    • Accession: NZ_OY978240.1
    • Description: Klebsiella pneumoniae strain KP4482023BGR isolate KP4482023 plasmid P_KP4482023_6, complete sequence
    • Source: refseq
    • Created at NCBI: Dec. 14, 2023

  • Host Taxonomy
    Assigned Host: Klebsiella pneumoniae (573)
  • Biosample
    Accession: 38661561
  • GEOGRAPHICAL INFORMATION
    • Original Query: 43.225887N;27.936721E
    • Original Query Type: coordinates
    • Address: МБАЛ Света Марина, Georgi Kitov str., м-т Сотира, Приморски, Varna, 9005, Bulgaria
    • Coordinates (Lat/Lon): 43.23/27.94
  • ECOSYSTEM
    • Original Query: Homo sapiens,human blood
    • Classification: blood,circulatory_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: diseased
    • DOID/SYMP:
      • Disease (DOID:4 )
        • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

    • Visualization

    PNG JSON

  • Sequence
    • Accession: NZ_OY899166.1
    • Description: Klebsiella pneumoniae strain KP31612023BGR isolate KP31612023 plasmid P_KP31612023_7, complete sequence
    • Source: refseq
    • Created at NCBI: Dec. 7, 2023

  • Host Taxonomy
    Assigned Host: Klebsiella pneumoniae (573)
  • Biosample
    Accession: 38661562
  • GEOGRAPHICAL INFORMATION
    • Original Query: 43.225887N;27.936721E
    • Original Query Type: coordinates
    • Address: МБАЛ Света Марина, Georgi Kitov str., м-т Сотира, Приморски, Varna, 9005, Bulgaria
    • Coordinates (Lat/Lon): 43.23/27.94
  • ECOSYSTEM
    • Original Query: Homo sapiens,human abdominal fluid
    • Classification: abdominal,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: diseased
    • DOID/SYMP:
      • Disease (DOID:4 )
        • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

    • Visualization

    PNG JSON

  • Sequence
    • Accession: NZ_OY856408.1
    • Description: Klebsiella pneumoniae strain KP1462023BGR isolate KP1462023 plasmid P_KP1462023_5, complete sequence
    • Source: refseq
    • Created at NCBI: Dec. 4, 2023

  • Host Taxonomy
    Assigned Host: Klebsiella pneumoniae (573)
  • Biosample
    Accession: 38661558
  • GEOGRAPHICAL INFORMATION
    • Original Query: 43.225887N;27.936721E
    • Original Query Type: coordinates
    • Address: МБАЛ Света Марина, Georgi Kitov str., м-т Сотира, Приморски, Varna, 9005, Bulgaria
    • Coordinates (Lat/Lon): 43.23/27.94
  • ECOSYSTEM
    • Original Query: Homo sapiens,human urine
    • Classification: host_associated,urinary_system
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: diseased
    • DOID/SYMP:
      • Disease (DOID:4 )
        • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

    • Visualization

    PNG JSON

Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore