Plasmid NZ_OY856407.1

Sequence

Nucleotide Information

Accession NZ_OY856407.1
Description Klebsiella pneumoniae strain KP1462023BGR isolate KP1462023 plasmid P_KP1462023_4, complete sequence
Source refseq
Topology circular
Length 5459 bp
GC Content 0.42 %
Created at NCBI Dec. 4, 2023



Assembly

Genome Data Information

Accession GCF_963693505.1
Assembly Coverage 113


Biosample

Curated Collection Information
Accession 38661558

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 43.225887N;27.936721E
Original Query Type coordinates
Coordinates (Lat/Lon) 43.23/27.94
Address МБАЛ Света Марина, Georgi Kitov str., м-т Сотира, Приморски, Varna, 9005, Bulgaria

ECOSYSTEM
Original Query Homo sapiens,human urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGWYL domain-containing proteincopy
PGAGhypothetical proteincopy
PGAGDUF1883 domain-containing proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGDNA-binding proteincopy
PGAGRop family plasmid primer RNA-binding proteincopy
MOB-typerColRNAI_rep_cluster_1987copy
MOB-typerColRNAI_rep_cluster_1987copy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 9 of 9 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000019__CP000651_00005ColRNAI_rep_cluster_19871109plus96.364988.230000000000001e-43180
repliconCP024554_00008ColRNAI_rep_cluster_198751655459plus92.881991.38e-117429
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 2 of 2 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2