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v. 2024_05_31_v2
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Plasmid NZ_OY839929.1
Sequence
Nucleotide Information
Accession
NZ_OY839929.1
Description
Escherichia coli isolate F190 plasmid pF190-3, complete sequence
Source
refseq
Topology
circular
Length
35379 bp
GC Content
0.42 %
Created at NCBI
Dec. 3, 2023
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Biosample
Curated Collection Information
Accession
35791996
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
France
Original Query Type
name
Coordinates (Lat/Lon)
46.60/1.89
Address
France
ECOSYSTEM
Original Query
broiler
Classification
host_associated
Host-associated Taxon
Gallus gallus (
9031
)
Host-associated Age
6
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_OY839928.1
NZ_OY839927.1
Similar Plasmids
based on Mash distance
NZ_OY754352.1
See Comparison
NZ_OY839929.1
See Comparison
NZ_OY757100.1
See Comparison
NZ_OY754352.1
See Comparison
CP052800.1
See Comparison
CP059928.1
See Comparison
NZ_OY757100.1
See Comparison
CP052800.1
See Comparison
CP059928.1
See Comparison
NZ_OY757100.1
See Comparison
CP052800.1
See Comparison
NZ_OY754352.1
See Comparison
NZ_OY757100.1
See Comparison
CP059928.1
See Comparison
NZ_OY754352.1
See Comparison
CP052800.1
See Comparison
CP059928.1
See Comparison
NZ_OY757100.1
See Comparison
NZ_OY754352.1
See Comparison
CP052800.1
See Comparison
CP059928.1
See Comparison
NZ_OY757100.1
See Comparison
CP052800.1
See Comparison
CP059928.1
See Comparison
NZ_OY754352.1
See Comparison
Identical Plasmids
100% Sequence Identity
NZ_OY757100.1
Sequence
Accession
:
NZ_OY757100.1
Description
: Escherichia coli isolate F862 plasmid pF862-3, complete sequence
Source
: refseq
Created at NCBI
: Nov. 3, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
35792042
GEOGRAPHICAL INFORMATION
Original Query
: France
Original Query Type
: name
Address
: France
Coordinates
(Lat/Lon): 46.60/1.89
ECOSYSTEM
Original Query
: broiler
Classification
: host_associated
Host-associated Taxon
:
Gallus gallus (
9031
)
Visualization
PNG
JSON
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
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NUCCORE ACC
Source
Element Name
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Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore