Plasmid NZ_OY754362.1

Sequence

Nucleotide Information

Accession NZ_OY754362.1
Description Escherichia coli isolate F1022 plasmid pF1022-5, complete sequence
Source refseq
Topology circular
Length 6074 bp
GC Content 0.49 %
Created at NCBI Oct. 27, 2023



Assembly

Genome Data Information

Accession GCF_963575365.1
Assembly Coverage 60


Biosample

Curated Collection Information
Accession 35792124

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query France
Original Query Type name
Coordinates (Lat/Lon) 46.60/1.89
Address France

ECOSYSTEM
Original Query hen
Classification host_associated
Host-associated Taxon
  • Gallus gallus (9031)
Host-associated Age 6

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Identical Plasmids

100% Sequence Identity




  • Sequence
    • Accession: CP134896.1
    • Description: Escherichia coli strain 4080 plasmid pMB4926_5, complete sequence
    • Source: insd
    • Created at NCBI: Sept. 27, 2023

  • Host Taxonomy
    Assigned Host: Escherichia coli (562)
  • Biosample
    Accession: 32977769
  • GEOGRAPHICAL INFORMATION
    • Original Query: 29.7068N;95.3971W
    • Original Query Type: coordinates
    • Address: University of Texas MD Anderson Cancer Center, 1515, Holcombe Boulevard, Texas Medical Center, Houston, Harris County, Texas, 77030, United States
    • Coordinates (Lat/Lon): 29.71/-95.40
  • ECOSYSTEM
    • Original Query: Homo sapiens,blood
    • Classification: blood,circulatory_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: bacteremia
    • DOID/SYMP:
      • Bacterial infectious disease (DOID:104 )
        • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
        • Has_material_basis_in: ['bacteria']

    • Visualization

    PNG JSON

Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore