Plasmid NZ_OX460319.1

Sequence

Nucleotide Information

Accession NZ_OX460319.1
Description Escherichia coli strain EC0880B isolate EC0880B_R3 plasmid 2, complete sequence
Source refseq
Topology circular
Length 159448 bp
GC Content 0.50 %
Created at NCBI April 8, 2023



Assembly

Genome Data Information

Accession GCF_949786295.1
Assembly Coverage 439


Biosample

Curated Collection Information
Accession 34127993

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query Derived from parental isolate EC0880B in laboratory.
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusiucBcopy
amrfinderplustet(B)copy
amrfinderplusaph(6)-Idcopy
amrfinderplusaph(3'')-Ibcopy
amrfinderplusiucCcopy
amrfinderplusiroNcopy
amrfinderpluscvaCcopy
amrfinderplusiroCcopy
amrfinderplusisscopy
amrfinderplusiroDcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 162 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formation08-5333_00200MPF_Unknown7910081286minus98.7810001467
mate-pair-formationNC_009837_00049MPF_F8284385797minus94.8339901866
mate-pair-formationNC_009837_00049MPF_F8579787011minus98.765990783
mate-pair-formationNC_010488_00021MPF_F8962491429minus99.16910001179
mate-pair-formationNC_018966_00040MPF_F9142992019minus100932.1800000000000003e-129408
mate-pair-formationNC_017639_00100MPF_F9210993065minus99.06910607
mate-pair-formationNC_007675_00027MPF_F9306593694minus99.524977.559999999999999e-136427
mate-pair-formationNC_013437_00116MPF_T9408096701minus91.3049901647
mate-pair-formationNC_017639_00094MPF_F9722097732minus96.4911004.49e-96310
mate-pair-formationNC_019094_00090MPF_F98789100183minus96.137960815
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 19 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2