Plasmid NZ_OW970426.1
Sequence
Nucleotide Information
| Accession | NZ_OW970426.1 |
|---|---|
| Description | Klebsiella pneumoniae isolate 147 plasmid P4, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 7926 bp |
| GC Content | 0.48 % |
| Created at NCBI | May 20, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 22316557 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Spain |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 39.33/-4.84 |
| Address | Spain |
ECOSYSTEM
| Original Query | Homo sapiens,Hospital Univeristario de Bellvitge (Barcelona) |
|---|---|
| Classification | anthropogenic,hospital,host_associated,location |
| Host-associated Taxon |
|
DISEASE
| Original Query | diseased |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Identical Plasmids
100% Sequence Identity
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Sequence
- Accession: NZ_OW970441.1
- Description: Klebsiella pneumoniae isolate 147 plasmid P5, complete sequence
- Source: refseq
- Created at NCBI: May 20, 2022
-
Host Taxonomy
Assigned Host: Klebsiella pneumoniae (573)- Superkingdom : Bacteria (2)
- Phylum : Pseudomonadota (1224)
- Class : Gammaproteobacteria (1236)
- Order : Enterobacterales (91347)
- Family : Enterobacteriaceae (543)
- Genus : Klebsiella (570)
- Species : Klebsiella_pneumoniae (573)
- Strain:
-
Biosample
Accession: 22316550 - GEOGRAPHICAL INFORMATION
- Original Query: Spain
- Original Query Type: name
- Address: Spain
- Coordinates (Lat/Lon): 39.33/-4.84
- ECOSYSTEM
- Original Query: Homo sapiens,Hospital Univeristario de Bellvitge (Barcelona)
- Classification: anthropogenic,hospital,host_associated,location
- Host-associated Taxon:
- Homo sapiens (9606)
- DISEASE
- Original Query: diseased
- DOID/SYMP:
- Disease (DOID:4 ) A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
Visualization
Plasmid Visualization
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| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | helix-turn-helix domain-containing protein | copy | ||
| PGAG | Rop family plasmid primer RNA-binding protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | AAA family ATPase | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | Tn3-like element Tn5403 family transposase | copy | ||
| PGAG | recombinase family protein | copy | ||
| MOB-typer | ColRNAI_rep_cluster_1987 | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 8 of 8 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | CP024554_00008 | ColRNAI_rep_cluster_1987 | 624 | 1026 | plus | 92.611 | 99 | 3.5900000000000006e-163 | 580 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 1 of 1 entry
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |