Plasmid NZ_OW969877.1

Sequence

Nucleotide Information

Accession NZ_OW969877.1
Description Citrobacter freundii isolate 22 plasmid P2, complete sequence
Source refseq
Topology circular
Length 158488 bp
GC Content 0.53 %
Created at NCBI May 20, 2022



Assembly

Genome Data Information

Accession GCF_905335685.2
Assembly Coverage 195


Biosample

Curated Collection Information
Accession 22316989

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Spain
Original Query Type name
Coordinates (Lat/Lon) 39.33/-4.84
Address Spain

ECOSYSTEM
Original Query Homo sapiens,Hospital Puerta de Hierro (Madrid)
Classification anthropogenic,hospital,host_associated,location
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_OW969877.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplussul1copy
amrfinderplusdfrA12copy
rgiaadA2copy
amrfinderplusaadA2copy
rgimphAcopy
rgiMrxcopy
amrfinderplusqacEdelta1copy
amrfinderplusmerTcopy
amrfinderplusmph(A)copy
PGAGRepB family plasmid replication initiator proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 179 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconCP019182_00137IncFIB1978plus93.6810001465
repliconCP042519_00001rep_cluster_22728630887063minus10010001397
repliconAJ851089IncFII8716987433plus85.7681001.15e-71276
relaxaseNC_021501_00073MOBF9089596132minus99.77110003400
mate-pair-formationNC_021501_00074MPF_T9613598333minus97.86110001297
mate-pair-formationNC_021501_00076MPF_F99707102490minus1009901798
mate-pair-formationNC_006323_00113MPF_F102493103839minus97.996980867
mate-pair-formationNC_021501_00083MPF_F106080107930minus99.83810001241
mate-pair-formationNC_021501_00084MPF_F107930108511minus100933.0400000000000005e-129407
mate-pair-formationNC_021501_00085MPF_F108576109565minus99.3941000638
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 16 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2