Plasmid NZ_OW969634.1

Sequence

Nucleotide Information

Accession NZ_OW969634.1
Description Klebsiella aerogenes isolate 57 plasmid P1, complete sequence
Source refseq
Topology circular
Length 191161 bp
GC Content 0.51 %
Created at NCBI May 20, 2022



Assembly

Genome Data Information

Accession GCF_905333855.2
Assembly Coverage 193


Biosample

Curated Collection Information
Accession 22316954

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Spain
Original Query Type name
Coordinates (Lat/Lon) 39.33/-4.84
Address Spain

ECOSYSTEM
Original Query Homo sapiens,Hospital Universitario La Princesa (Madrid)
Classification anthropogenic,hospital,host_associated,location
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderpluspcoBcopy
amrfinderpluspcoAcopy
amrfinderpluspcoCcopy
amrfinderplussul2copy
amrfinderplussilFcopy
amrfinderplussilRcopy
amrfinderplussilAcopy
amrfinderplussilCcopy
amrfinderplussilBcopy
amrfinderplussilScopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 217 entries
…



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
Loading...
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
Loading...
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
Loading...
NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000107__CP014778_00094IncFIB11011plus90.70210001347
replicon000124__KP125893_00142IncFII111443111649minus99.5171002.36e-102377
relaxaseNC_021231_00058MOBF116817122072minus95.15110003266
relaxaseCP035180_00077MOBF122084122839minus92.46990380
mate-pair-formationNC_021502_00150MPF_T122075124384minus99.35110001452
mate-pair-formationNC_014312_00141MPF_F127005129824minus99.25510001871
mate-pair-formationNC_019165_00034MPF_F129830131182minus94.457990792
mate-pair-formationNC_021654_00016MPF_F134076136037minus98.4719801242
mate-pair-formationNC_011281_00082MPF_F136090136734minus94.4191001.23e-123392
mate-pair-formationNC_022609_00081MPF_F137013137999minus95.1521000652
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 16 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
Loading...
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2