Plasmid NZ_OW849213.1

Sequence

Nucleotide Information

Accession NZ_OW849213.1
Description Citrobacter freundii isolate 18 plasmid P5, complete sequence
Source refseq
Topology circular
Length 3810 bp
GC Content 0.56 %
Created at NCBI May 14, 2022



Assembly

Genome Data Information

Accession GCF_905232605.2
Assembly Coverage 635


Biosample

Curated Collection Information
Accession 22316666

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Spain
Original Query Type name
Coordinates (Lat/Lon) 39.33/-4.84
Address Spain

ECOSYSTEM
Original Query Homo sapiens,Hospital Universitario Central de Asturias (Oviedo)
Classification anthropogenic,hospital,host_associated,location
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_OW849213.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGMobC family plasmid mobilization relaxosome proteincopy
PGAGMbeB family mobilization proteincopy
PGAGMbeD family mobilization/exclusion proteincopy
PGAGhelix-turn-helix domain-containing proteincopy
MOB-typerMOBPcopy
MOB-typerrep_cluster_2335copy
MOB-typerMOBPcopy
MOB-typerMOBPcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 8 of 8 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
Loading...
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
Loading...
NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
oriTHQ328804MOBP32893462plus95.9771004.31e-74283
repliconKU302809_00001rep_cluster_233528183365minus93.636900817
relaxaseNC_011404_00002MOBP781571plus94.21000908
relaxaseNC_001848_00006MOBP35753808plus93.59992.64e-43156
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 4 of 4 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
Loading...
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2