Plasmid NZ_OU016029.1

Sequence

Nucleotide Information

Accession NZ_OU016029.1
Description Enterococcus faecium isolate USZ_VRE67_P60 plasmid pl2, complete sequence
Source refseq
Topology circular
Length 47525 bp
GC Content 0.35 %
Created at NCBI May 12, 2021



Assembly

Genome Data Information

Accession GCF_907176815.1
Assembly Coverage 36


Biosample

Curated Collection Information
Accession 19039099

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 47.4N;8.5E
Original Query Type coordinates
Coordinates (Lat/Lon) 47.40/8.50
Address 25b, Bauherrenstrasse, Höngg, Kreis 10, Zurich, District Zurich, Zurich, 8049, Switzerland

ECOSYSTEM
Original Query Homo sapiens,Superficial wound
Classification host_associated,wound
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP076331.1 See Comparison
NZ_CP083914.1 See Comparison
NZ_OU015948.1 See Comparison
NZ_OU016039.1 See Comparison
NZ_CP083914.1 See Comparison
NZ_CP060862.1 See Comparison
NZ_CP076331.1 See Comparison
NZ_OU015948.1 See Comparison
NZ_OU016039.1 See Comparison
NZ_CP020486.1 See Comparison
NZ_CP020490.1 See Comparison
NZ_CP027519.1 See Comparison
NZ_CP020486.1 See Comparison
NZ_CP020490.1 See Comparison
NZ_CP027519.1 See Comparison
NZ_CP083914.1 See Comparison
NZ_CP060862.1 See Comparison
NZ_CP076331.1 See Comparison
NZ_OU015948.1 See Comparison
NZ_OU016039.1 See Comparison
NZ_CP020486.1 See Comparison
NZ_CP020490.1 See Comparison
NZ_CP027519.1 See Comparison
NZ_CP076331.1 See Comparison
NZ_CP060862.1 See Comparison
NZ_CP083914.1 See Comparison
NZ_OU015948.1 See Comparison
NZ_OU016039.1 See Comparison
NZ_CP020486.1 See Comparison
NZ_CP020490.1 See Comparison
NZ_CP027519.1 See Comparison
NZ_OU015948.1 See Comparison
NZ_CP060862.1 See Comparison
NZ_CP076331.1 See Comparison
NZ_CP083914.1 See Comparison
NZ_OU016039.1 See Comparison
NZ_CP027519.1 See Comparison
NZ_CP020486.1 See Comparison
NZ_CP020490.1 See Comparison
NZ_OU015948.1 See Comparison
NZ_CP076331.1 See Comparison
NZ_CP083914.1 See Comparison
NZ_CP060862.1 See Comparison
NZ_OU016039.1 See Comparison
NZ_CP027519.1 See Comparison
NZ_CP027519.1 See Comparison
NZ_CP083914.1 See Comparison
NZ_OU015948.1 See Comparison
NZ_OU016039.1 See Comparison
NZ_OU016029.1 See Comparison
NZ_CP020486.1 See Comparison
NZ_CP020490.1 See Comparison
NZ_CP060862.1 See Comparison
NZ_CP076331.1 See Comparison
NZ_CP060862.1 See Comparison
NZ_CP020486.1 See Comparison
NZ_CP020490.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2