Plasmid NZ_OR797032.1
Sequence
Nucleotide Information
| Accession | NZ_OR797032.1 |
|---|---|
| Description | Salmonella enterica subsp. enterica serovar Panama strain Pan61 plasmid pPan61-incN, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 47695 bp |
| GC Content | 0.52 % |
| Created at NCBI | Dec. 11, 2023 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Salmonella enterica (29472) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Salmonella (590) |
| Species | Salmonella_enterica (28901) |
| Strain |
Similar Plasmids
based on Mash distance
Plasmid Visualization
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| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | tet(A) | copy | ||
| amrfinderplus | blaTEM-1 | copy | ||
| PGAG | replication initiation protein | copy | ||
| PGAG | recombinase family protein | copy | ||
| PGAG | type II site-specific deoxyribonuclease | copy | ||
| PGAG | DNA cytosine methyltransferase | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | restriction endonuclease | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | TrbM/KikA/MpfK family conjugal transfer protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 59 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | NZ_CP013027 | MOBF | 36004 | 36271 | minus | 100 | 100 | 8.36e-138 | 496 |
| mate-pair-formation | NC_009131_00030 | MPF_T | 10073 | 10387 | plus | 100 | 100 | 6.62e-63 | 212 |
| replicon | 000155__CP018649 | IncN | 1 | 720 | plus | 100 | 100 | 0 | 1330 |
| relaxase | NC_015599_00019 | MOBF | 30819 | 33995 | minus | 99.811 | 98 | 0 | 2030 |
| mate-pair-formation | NC_011617_00041 | MPF_T | 10390 | 12987 | plus | 99.769 | 100 | 0 | 1809 |
| mate-pair-formation | NC_014368_00014 | MPF_T | 13972 | 15009 | plus | 91.908 | 100 | 1.5100000000000002e-163 | 513 |
| mate-pair-formation | NC_007682_00044 | MPF_T | 20186 | 20881 | plus | 100 | 100 | 9.99e-155 | 481 |
| mate-pair-formation | NC_008612_00190 | MPF_T | 20895 | 21776 | plus | 99.32 | 100 | 1.61e-175 | 544 |
| mate-pair-formation | NC_022375_00024 | MPF_T | 33998 | 35524 | minus | 99.804 | 100 | 0 | 996 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 9 of 9 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |