Plasmid NZ_OQ821097.1
Sequence
Nucleotide Information
Accession | NZ_OQ821097.1 |
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Description | Klebsiella pneumoniae strain 11A20CPO021 plasmid p11A20021_A_KPC, complete sequence |
Source | refseq |
Topology | circular |
Length | 175879 bp |
GC Content | 0.54 % |
Created at NCBI | Nov. 21, 2023 |
Host Taxonomy
According to NCBI Taxonomy
Assigned Host | Klebsiella pneumoniae (573) |
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Lineage
Superkingdom | Bacteria (2) |
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Phylum | Pseudomonadota (1224) |
Class | Gammaproteobacteria (1236) |
Order | Enterobacterales (91347) |
Family | Enterobacteriaceae (543) |
Genus | Klebsiella (570) |
Species | Klebsiella_pneumoniae (573) |
Strain |
Similar Plasmids
based on Mash distance
Plasmid Visualization
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Source | Element Name | Display | Sequence | Favorite |
---|---|---|---|---|
amrfinderplus | dfrA12 | copy | ||
amrfinderplus | hsp20 | copy | ||
amrfinderplus | clpK | copy | ||
rgi | mphA | copy | ||
rgi | aadA2 | copy | ||
rgi | Mrx | copy | ||
amrfinderplus | pcoS | copy | ||
amrfinderplus | pcoC | copy | ||
amrfinderplus | pcoR | copy | ||
amrfinderplus | pcoD | copy | ||
Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 202 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
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NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
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NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
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NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
---|---|---|---|---|---|---|---|---|---|
replicon | 000107__CP014778_00094 | IncFIB | 1 | 1011 | plus | 90.307 | 100 | 0 | 1325 |
replicon | CP017721_00179 | rep_cluster_2183 | 108554 | 109381 | minus | 81.928 | 96 | 0 | 699 |
replicon | 000132__HG969996 | IncFII | 109416 | 109650 | plus | 99.574 | 100 | 7.44e-118 | 429 |
relaxase | NC_021231_00058 | MOBF | 116764 | 122022 | minus | 98.232 | 100 | 0 | 3374 |
relaxase | CP035180_00077 | MOBF | 122034 | 122789 | minus | 91.27 | 98 | 0 | 366 |
mate-pair-formation | NC_021502_00150 | MPF_T | 122025 | 124334 | minus | 97.403 | 100 | 0 | 1425 |
mate-pair-formation | NC_019155_00032 | MPF_F | 126154 | 128997 | minus | 100 | 99 | 0 | 1855 |
mate-pair-formation | NC_019165_00034 | MPF_F | 129000 | 130367 | minus | 99.781 | 100 | 0 | 842 |
mate-pair-formation | NC_021654_00016 | MPF_F | 133167 | 135170 | minus | 100 | 100 | 0 | 1292 |
mate-pair-formation | NC_019389_00080 | MPF_F | 135170 | 135805 | minus | 96.698 | 100 | 3.2499999999999997e-135 | 424 |
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 17 entries