Plasmid NZ_OQ821097.1

Sequence

Nucleotide Information

Accession NZ_OQ821097.1
Description Klebsiella pneumoniae strain 11A20CPO021 plasmid p11A20021_A_KPC, complete sequence
Source refseq
Topology circular
Length 175879 bp
GC Content 0.54 %
Created at NCBI Nov. 21, 2023






Plasmid Visualization


SourceElement Name Display Sequence Favorite
amrfinderplusdfrA12copy
amrfinderplushsp20copy
amrfinderplusclpKcopy
rgimphAcopy
rgiaadA2copy
rgiMrxcopy
amrfinderpluspcoScopy
amrfinderpluspcoCcopy
amrfinderpluspcoRcopy
amrfinderpluspcoDcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 202 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000107__CP014778_00094IncFIB11011plus90.30710001325
repliconCP017721_00179rep_cluster_2183108554109381minus81.928960699
replicon000132__HG969996IncFII109416109650plus99.5741007.44e-118429
relaxaseNC_021231_00058MOBF116764122022minus98.23210003374
relaxaseCP035180_00077MOBF122034122789minus91.27980366
mate-pair-formationNC_021502_00150MPF_T122025124334minus97.40310001425
mate-pair-formationNC_019155_00032MPF_F126154128997minus1009901855
mate-pair-formationNC_019165_00034MPF_F129000130367minus99.7811000842
mate-pair-formationNC_021654_00016MPF_F133167135170minus10010001292
mate-pair-formationNC_019389_00080MPF_F135170135805minus96.6981003.2499999999999997e-135424
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 17 entries