Plasmid NZ_OQ821031.1

Sequence

Nucleotide Information

Accession NZ_OQ821031.1
Description Citrobacter portucalensis strain 07B17CRGN010A plasmid p07B17010A_B_KPC, complete sequence
Source refseq
Topology circular
Length 21579 bp
GC Content 0.58 %
Created at NCBI Nov. 21, 2023






Plasmid Visualization


SourceElement Name Display Sequence Favorite
amrfinderplusblaKPC-3copy
amrfinderplusaac(6')-Ibcopy
rgiaadA15copy
rgiAAC(6')-Ib10copy
PGAGistAcopy
PGAGistBcopy
PGAGcarbapenem-hydrolyzing class A beta-lactamase KPC-3copy
PGAGIS1182-like element ISKpn6 family transposasecopy
PGAGhypothetical proteincopy
PGAGtype II toxin-antitoxin system RelE/ParE family toxincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 24 entries



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000003__NC_002119_00001ColRNAI_rep_cluster_1857973710316plus95.3611000924
relaxaseNC_009793_00003MOBC62466974minus1001001.35e-150470
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 2 of 2 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2