Plasmid NZ_OQ821031.1
Sequence
Nucleotide Information
Accession | NZ_OQ821031.1 |
---|---|
Description | Citrobacter portucalensis strain 07B17CRGN010A plasmid p07B17010A_B_KPC, complete sequence |
Source | refseq |
Topology | circular |
Length | 21579 bp |
GC Content | 0.58 % |
Created at NCBI | Nov. 21, 2023 |
Host Taxonomy
According to NCBI Taxonomy
Assigned Host | Citrobacter portucalensis (1639133) |
---|
Lineage
Superkingdom | Bacteria (2) |
---|---|
Phylum | Pseudomonadota (1224) |
Class | Gammaproteobacteria (1236) |
Order | Enterobacterales (91347) |
Family | Enterobacteriaceae (543) |
Genus | Citrobacter (544) |
Species | Citrobacter_portucalensis (1639133) |
Strain |
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
Source | Element Name | Display | Sequence | Favorite |
---|---|---|---|---|
amrfinderplus | blaKPC-3 | copy | ||
amrfinderplus | aac(6')-Ib | copy | ||
rgi | aadA15 | copy | ||
rgi | AAC(6')-Ib10 | copy | ||
PGAG | istA | copy | ||
PGAG | istB | copy | ||
PGAG | carbapenem-hydrolyzing class A beta-lactamase KPC-3 | copy | ||
PGAG | IS1182-like element ISKpn6 family transposase | copy | ||
PGAG | hypothetical protein | copy | ||
PGAG | type II toxin-antitoxin system RelE/ParE family toxin | copy | ||
Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 24 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
---|---|---|---|---|---|---|---|
Loading... | |||||||
NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
---|---|---|---|---|---|---|---|---|---|---|---|---|
Loading... | ||||||||||||
NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
---|---|---|---|---|---|---|---|---|---|---|
Loading... | ||||||||||
NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
---|---|---|---|---|---|---|---|---|---|
replicon | 000003__NC_002119_00001 | ColRNAI_rep_cluster_1857 | 9737 | 10316 | plus | 95.361 | 100 | 0 | 924 |
relaxase | NC_009793_00003 | MOBC | 6246 | 6974 | minus | 100 | 100 | 1.35e-150 | 470 |
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 2 of 2 entries
Detected typing markers by plasmidfinder
NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
---|---|---|---|---|---|---|---|---|
Loading... | ||||||||
NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |