Plasmid NZ_OQ785271.1
Sequence
Nucleotide Information
| Accession | NZ_OQ785271.1 |
|---|---|
| Description | Klebsiella pneumoniae strain KR20-389 plasmid pKR20-389-NDM, complete sequence |
| Source | refseq |
| Topology | linear |
| Length | 54067 bp |
| GC Content | 0.52 % |
| Created at NCBI | Oct. 2, 2023 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
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Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | catB3 | copy | ||
| amrfinderplus | ble | copy | ||
| rgi | BRP(MBL) | copy | ||
| rgi | qacEdelta1 | copy | ||
| rgi | APH(3')-VIa | copy | ||
| rgi | AAC(6')-Ib-cr6 | copy | ||
| amrfinderplus | qnrS1 | copy | ||
| amrfinderplus | arr-3 | copy | ||
| amrfinderplus | blaNDM-1 | copy | ||
| amrfinderplus | blaOXA-1 | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 64 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000097__NC_025166_00051 | IncFIB | 39857 | 40753 | plus | 100 | 100 | 0 | 1657 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 1 of 1 entry
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |