Plasmid NZ_OP242260.1

Sequence

Nucleotide Information

Accession NZ_OP242260.1
Description Escherichia coli strain LA124 plasmid pLAO30, complete sequence
Source refseq
Topology circular
Length 4664 bp
GC Content 0.52 %
Created at NCBI Feb. 13, 2023



Biosample

Curated Collection Information
Accession 29363350

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 17.962460N;102.613180E
Original Query Type coordinates
Coordinates (Lat/Lon) 17.96/102.61
Address Rue Mahosot, Nongchanh, Vientiane Capital, Sisattanak District, Vientiane Prefecture, 01006, Laos

ECOSYSTEM
Original Query Homo sapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

CP098964.1 See Comparison
CP098973.1 See Comparison
NZ_CP074045.1 See Comparison
NZ_CP067271.1 See Comparison
NZ_CP067316.1 See Comparison
NZ_AP027476.1 See Comparison
NZ_CP115318.1 See Comparison
NZ_CP010156.1 See Comparison
NZ_CP041445.1 See Comparison
NZ_KT074362.1 See Comparison
CP098964.1 See Comparison
CP098973.1 See Comparison
NZ_CP041445.1 See Comparison
NZ_CP067271.1 See Comparison
NZ_CP067316.1 See Comparison
NZ_OP242260.1 See Comparison
NZ_CP074045.1 See Comparison
NZ_CP010156.1 See Comparison
NZ_CP115318.1 See Comparison
NZ_KT074362.1 See Comparison
NZ_AP027476.1 See Comparison
CP098964.1 See Comparison
CP098964.1 See Comparison
CP098973.1 See Comparison
NZ_CP074045.1 See Comparison
NZ_CP067271.1 See Comparison
NZ_CP067316.1 See Comparison
NZ_AP027476.1 See Comparison
NZ_KT074362.1 See Comparison
NZ_CP010156.1 See Comparison
NZ_CP041445.1 See Comparison
NZ_CP115318.1 See Comparison
CP098973.1 See Comparison
NZ_CP074045.1 See Comparison
NZ_CP010156.1 See Comparison
NZ_CP067271.1 See Comparison
NZ_CP067316.1 See Comparison
NZ_CP041445.1 See Comparison
NZ_CP115318.1 See Comparison
NZ_KT074362.1 See Comparison
NZ_AP027476.1 See Comparison
NZ_CP067316.1 See Comparison
CP098964.1 See Comparison
CP098973.1 See Comparison
NZ_CP074045.1 See Comparison
NZ_CP067271.1 See Comparison
NZ_CP067271.1 See Comparison
CP098964.1 See Comparison
CP098973.1 See Comparison
NZ_CP067316.1 See Comparison
NZ_CP010156.1 See Comparison
NZ_CP041445.1 See Comparison
NZ_CP115318.1 See Comparison
NZ_AP027476.1 See Comparison
NZ_KT074362.1 See Comparison
NZ_CP074045.1 See Comparison
NZ_KT074362.1 See Comparison
NZ_CP010156.1 See Comparison
NZ_CP041445.1 See Comparison
NZ_CP115318.1 See Comparison
NZ_AP027476.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore