Plasmid NZ_OM489426.1

Sequence

Nucleotide Information

Accession NZ_OM489426.1
Description Klebsiella pneumoniae strain 0323-2021 plasmid 0323_pKpQIL, complete sequence
Source refseq
Topology circular
Length 136308 bp
GC Content 0.55 %
Created at NCBI June 6, 2022



Biosample

Curated Collection Information
Accession 25512402

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 41.54N;12.28E
Original Query Type coordinates
Coordinates (Lat/Lon) 41.54/12.28
Address Italy

ECOSYSTEM
Original Query Homo sapiens,blood culture
Classification blood,cell_culture,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query bloodstream infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusmerCcopy
amrfinderplusblaKPC-3copy
amrfinderplusblaKPC-3copy
amrfinderplusblaKPC-31copy
amrfinderplusblaTEM-1copy
rgiOXA-9copy
rgiOXA-9copy
PGAGRepB family plasmid replication initiator proteincopy
PGAGAAA family ATPasecopy
PGAGParB family proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 162 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_021502_00150MPF_T4702549334plus96.62310001413
mate-pair-formationNC_011281_00082MPF_F7692577158plus96.154947.06e-41154
mate-pair-formationNC_021654_00016MPF_F7721179172plus98.4719801240
mate-pair-formationNC_019165_00034MPF_F8284384198plus98.23990820
mate-pair-formationNC_023905_00125MPF_F8420187047plus99.68410001769
mate-pair-formationNC_019389_00080MPF_F9760398025minus94.4441002.87e-83276
mate-pair-formationNC_022609_00081MPF_F9804198967minus96.117940607
mate-pair-formationNC_014312_00128MPF_F99464100081minus97.573981.46e-119380
mate-pair-formationNC_021502_00131MPF_T100473103109minus97.04210001761
mate-pair-formationNC_019389_00068MPF_F105671106186minus98.837892.02e-109350
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 18 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2