Plasmid NZ_MK388402.1

Sequence

Nucleotide Information

Accession NZ_MK388402.1
Description Staphylococcus aureus strain ph2 plasmid pAvX, complete sequence
Source refseq
Topology circular
Length 17220 bp
GC Content 0.29 %
Created at NCBI June 3, 2020



Biosample

Curated Collection Information
Accession 5853516

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query United Kingdom,Scotland
Original Query Type name
Coordinates (Lat/Lon) 56.79/-4.11
Address United Kingdom,Scotland

ECOSYSTEM
Original Query pheasant,whole organism,Farmed pheasant
Classification host_associated
Host-associated Taxon
  • Phasianus colchicus (9054)

DISEASE
Original Query tenosynovitis
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_MH785243.1 See Comparison
NZ_MH785251.1 See Comparison
NZ_MH785244.1 See Comparison
NZ_MH785253.1 See Comparison
NZ_MH785235.1 See Comparison
NZ_CP053077.1 See Comparison
NZ_MH785243.1 See Comparison
NZ_CP080250.1 See Comparison
NZ_MH785253.1 See Comparison
NZ_MH785235.1 See Comparison
NC_013453.1 See Comparison
NZ_CP042108.1 See Comparison
NZ_CP042045.1 See Comparison
NZ_CP042158.1 See Comparison
NZ_MH785251.1 See Comparison
NZ_MH785244.1 See Comparison
NZ_CP080250.1 See Comparison
NZ_CP053077.1 See Comparison
NZ_MH785251.1 See Comparison
NZ_CP042108.1 See Comparison
NZ_CP042045.1 See Comparison
NZ_CP042158.1 See Comparison
NC_013453.1 See Comparison
NZ_MH785244.1 See Comparison
NZ_MH785253.1 See Comparison
NZ_MH785235.1 See Comparison
NZ_MK388402.1 See Comparison
NZ_CP080250.1 See Comparison
NZ_MH785243.1 See Comparison
NZ_CP053077.1 See Comparison
NZ_MH785243.1 See Comparison
NC_013453.1 See Comparison
NZ_MH785243.1 See Comparison
NZ_MH785251.1 See Comparison
NZ_MH785244.1 See Comparison
NZ_MH785253.1 See Comparison
NZ_MH785235.1 See Comparison
NC_013453.1 See Comparison
NZ_CP042108.1 See Comparison
NZ_CP042045.1 See Comparison
NZ_CP042158.1 See Comparison
NZ_CP042108.1 See Comparison
NZ_CP042045.1 See Comparison
NZ_CP042158.1 See Comparison
NZ_CP053077.1 See Comparison
NZ_CP080250.1 See Comparison
NZ_MH785251.1 See Comparison
NZ_MH785244.1 See Comparison
NZ_MH785253.1 See Comparison
NZ_MH785235.1 See Comparison
NZ_CP053077.1 See Comparison
NZ_CP053077.1 See Comparison
NZ_CP080250.1 See Comparison
NC_013453.1 See Comparison
NZ_CP042108.1 See Comparison
NZ_CP042045.1 See Comparison
NZ_CP042158.1 See Comparison
NZ_MH785243.1 See Comparison
NZ_MH785251.1 See Comparison
NZ_MH785244.1 See Comparison
NZ_MH785253.1 See Comparison
NZ_MH785235.1 See Comparison
NC_013453.1 See Comparison
NZ_MH785243.1 See Comparison
NZ_CP080250.1 See Comparison
NZ_CP080250.1 See Comparison
NC_013453.1 See Comparison
NZ_CP042108.1 See Comparison
NZ_CP042045.1 See Comparison
NZ_CP042158.1 See Comparison
NZ_MH785251.1 See Comparison
NZ_MH785244.1 See Comparison
NZ_MH785253.1 See Comparison
NZ_MH785235.1 See Comparison
NZ_CP053077.1 See Comparison
NZ_CP042108.1 See Comparison
NZ_CP042045.1 See Comparison
NZ_CP042158.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2