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v. 2024_05_31_v2
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Typing
Plasmid NZ_MK158080.1
Sequence
Nucleotide Information
Accession
NZ_MK158080.1
Description
Klebsiella pneumoniae strain 13624 plasmid pSIM-1-BJ02, complete sequence
Source
refseq
Topology
circular
Length
95324 bp
GC Content
0.52 %
Created at NCBI
June 3, 2020
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Klebsiella pneumoniae (573)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Klebsiella (570)
Species
Klebsiella_pneumoniae (573)
Strain
Biosample
Curated Collection Information
Accession
14227932
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
China
Original Query Type
name
Coordinates (Lat/Lon)
34.41/86.03
Address
China
ECOSYSTEM
Original Query
Homo sapiens,urine from femaile
Classification
host_associated,urinary_system
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Similar Plasmids
based on Mash distance
CP071168.1
See Comparison
NZ_CP110195.1
See Comparison
NZ_CP101795.1
See Comparison
NZ_CP101795.1
See Comparison
NC_013950.1
See Comparison
NZ_CP031262.1
See Comparison
NZ_CP124704.1
See Comparison
NZ_CP110195.1
See Comparison
NZ_CP022442.1
See Comparison
NZ_CP149943.1
See Comparison
CP071168.1
See Comparison
CP071168.1
See Comparison
NZ_MK158080.1
See Comparison
NC_013950.1
See Comparison
NZ_CP022442.1
See Comparison
NZ_CP031262.1
See Comparison
NZ_CP124704.1
See Comparison
NZ_CP149943.1
See Comparison
NZ_CP149943.1
See Comparison
NC_013950.1
See Comparison
NZ_CP022442.1
See Comparison
NZ_CP110195.1
See Comparison
NZ_CP101795.1
See Comparison
NZ_CP031262.1
See Comparison
NZ_CP124704.1
See Comparison
NZ_CP149943.1
See Comparison
CP071168.1
See Comparison
NZ_CP110195.1
See Comparison
NZ_CP101795.1
See Comparison
NC_013950.1
See Comparison
NZ_CP022442.1
See Comparison
NZ_CP031262.1
See Comparison
NZ_CP124704.1
See Comparison
NZ_CP031262.1
See Comparison
CP071168.1
See Comparison
NZ_CP110195.1
See Comparison
NZ_CP101795.1
See Comparison
NZ_CP022442.1
See Comparison
NC_013950.1
See Comparison
NZ_CP149943.1
See Comparison
NZ_CP124704.1
See Comparison
NZ_CP110195.1
See Comparison
CP071168.1
See Comparison
NZ_CP031262.1
See Comparison
NZ_CP101795.1
See Comparison
NC_013950.1
See Comparison
NZ_CP022442.1
See Comparison
NZ_CP124704.1
See Comparison
NZ_CP149943.1
See Comparison
Identical Plasmids
100% Sequence Identity
NZ_CP022442.1
Sequence
Accession
:
NZ_CP022442.1
Description
: Klebsiella sp. LY plasmid unnamed1, complete sequence
Source
: refseq
Created at NCBI
: Jan. 12, 2019
Host Taxonomy
Assigned Host
:
Klebsiella sp. LY (2015795)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Klebsiella (570)
Species
:
Klebsiella_sp._LY (2015795)
Strain
:
Biosample
Accession
:
7280658
GEOGRAPHICAL INFORMATION
Original Query
: None
Original Query Type
: None
Address
: None
Coordinates
(Lat/Lon):
ECOSYSTEM
Original Query
: None
Classification
: None
Host-associated Taxon
:
Visualization
PNG
JSON
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore