Plasmid NZ_LT985241.1
Sequence
Nucleotide Information
| Accession | NZ_LT985241.1 |
|---|---|
| Description | Escherichia coli strain 721 plasmid RCS40_p, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 90291 bp |
| GC Content | 0.51 % |
| Created at NCBI | March 15, 2018 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Biosample
Curated Collection Information
| Accession | 8722152 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | None |
|---|---|
| Original Query Type | None |
| Coordinates (Lat/Lon) | |
| Address | None |
ECOSYSTEM
| Original Query | None |
|---|---|
| Classification | None |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | armA | copy | ||
| amrfinderplus | blaCTX-M-3 | copy | ||
| amrfinderplus | aadA2 | copy | ||
| amrfinderplus | aac(3)-IId | copy | ||
| amrfinderplus | dfrA12 | copy | ||
| amrfinderplus | blaTEM | copy | ||
| rgi | msrE | copy | ||
| rgi | mphE | copy | ||
| rgi | aadA2 | copy | ||
| amrfinderplus | qacEdelta1 | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 126 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000562__KT346360_00001 | rep_cluster_1254 | 31842 | 32596 | plus | 90.464 | 81 | 0 | 996 |
| replicon | AF550415 | IncL/M | 80776 | 81439 | plus | 100 | 100 | 0 | 1227 |
| relaxase | NC_004464_00056 | MOBP | 58519 | 60495 | plus | 100 | 100 | 0 | 1380 |
| mate-pair-formation | NC_004464_00105 | MPF_I | 25201 | 27285 | plus | 100 | 100 | 0 | 1415 |
| mate-pair-formation | NC_005246_00057 | MPF_I | 61051 | 61785 | plus | 99.592 | 95 | 2.02e-162 | 505 |
| mate-pair-formation | NC_019063_00094 | MPF_I | 66415 | 66924 | plus | 99.412 | 100 | 1.74e-108 | 346 |
| mate-pair-formation | NC_019344_00078 | MPF_I | 67590 | 68300 | plus | 99.578 | 100 | 4.9900000000000004e-130 | 411 |
| mate-pair-formation | NC_004464_00066 | MPF_I | 68312 | 69460 | plus | 100 | 100 | 0 | 647 |
| mate-pair-formation | NC_004464_00068 | MPF_I | 70836 | 71537 | plus | 100 | 100 | 4.11e-137 | 431 |
| mate-pair-formation | NC_019154_00069 | MPF_I | 71564 | 72091 | plus | 99.432 | 100 | 7.62e-100 | 321 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 12 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |