Plasmid NZ_LR890683.1

Sequence

Nucleotide Information

Accession NZ_LR890683.1
Description Klebsiella pneumoniae strain INF279 isolate INF279 plasmid 5, complete sequence
Source refseq
Topology circular
Length 3514 bp
GC Content 0.54 %
Created at NCBI Oct. 30, 2020



Assembly

Genome Data Information

Accession GCF_904866405.1
Assembly Coverage 59


Biosample

Curated Collection Information
Accession 4042729

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Australia
Original Query Type name
Coordinates (Lat/Lon) -24.78/134.76
Address Australia

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP141556.1 See Comparison
NZ_CP058185.1 See Comparison
NZ_LR890739.1 See Comparison
NZ_LR890419.1 See Comparison
NZ_LR890378.1 See Comparison
NZ_CP065169.1 See Comparison
LR890746.1 See Comparison
LR890530.1 See Comparison
LR890462.1 See Comparison
LR890404.1 See Comparison
LR890280.1 See Comparison
NZ_CP089389.1 See Comparison
NZ_LR890419.1 See Comparison
NZ_CP083795.1 See Comparison
NZ_CP083801.1 See Comparison
NZ_CP024493.1 See Comparison
CP024486.1 See Comparison
NZ_LR890739.1 See Comparison
NZ_CP008845.1 See Comparison
NZ_CP141556.1 See Comparison
NZ_CP058185.1 See Comparison
NZ_LR890378.1 See Comparison
NZ_CP008845.1 See Comparison
NZ_CP065169.1 See Comparison
NZ_CP083795.1 See Comparison
NZ_CP083801.1 See Comparison
LR890746.1 See Comparison
LR890530.1 See Comparison
LR890462.1 See Comparison
LR890404.1 See Comparison
LR890280.1 See Comparison
NZ_CP089389.1 See Comparison
NZ_LR890378.1 See Comparison
NZ_CP024493.1 See Comparison
CP024486.1 See Comparison
NZ_CP141556.1 See Comparison
NZ_CP058185.1 See Comparison
NZ_LR890419.1 See Comparison
NZ_CP065169.1 See Comparison
NZ_LR890739.1 See Comparison
NZ_CP083795.1 See Comparison
LR890746.1 See Comparison
LR890530.1 See Comparison
LR890462.1 See Comparison
LR890404.1 See Comparison
LR890280.1 See Comparison
NZ_CP089389.1 See Comparison
NZ_CP083801.1 See Comparison
NZ_CP008845.1 See Comparison
NZ_CP141556.1 See Comparison
NZ_CP024493.1 See Comparison
CP024486.1 See Comparison
NZ_CP058185.1 See Comparison
NZ_LR890419.1 See Comparison
NZ_LR890739.1 See Comparison
NZ_LR890683.1 See Comparison
NZ_LR890378.1 See Comparison
LR890404.1 See Comparison
NZ_CP065169.1 See Comparison
LR890280.1 See Comparison
NZ_CP089389.1 See Comparison
LR890746.1 See Comparison
LR890530.1 See Comparison
LR890462.1 See Comparison
NZ_CP083795.1 See Comparison
NZ_CP083801.1 See Comparison
NZ_CP024493.1 See Comparison
NZ_CP008845.1 See Comparison
CP024486.1 See Comparison
NZ_CP065169.1 See Comparison
NZ_LR890378.1 See Comparison
NZ_CP141556.1 See Comparison
NZ_CP058185.1 See Comparison
NZ_LR890739.1 See Comparison
NZ_LR890419.1 See Comparison
LR890746.1 See Comparison
LR890530.1 See Comparison
LR890462.1 See Comparison
LR890404.1 See Comparison
LR890280.1 See Comparison
NZ_CP089389.1 See Comparison
NZ_CP083795.1 See Comparison
NZ_CP083801.1 See Comparison
NZ_CP008845.1 See Comparison
NZ_LR890378.1 See Comparison
NZ_CP024493.1 See Comparison
CP024486.1 See Comparison
NZ_CP141556.1 See Comparison
NZ_CP058185.1 See Comparison
NZ_LR890739.1 See Comparison
NZ_LR890419.1 See Comparison
LR890746.1 See Comparison
NZ_CP065169.1 See Comparison
LR890530.1 See Comparison
LR890462.1 See Comparison
LR890404.1 See Comparison
LR890280.1 See Comparison
NZ_CP083795.1 See Comparison
NZ_CP008845.1 See Comparison
NZ_CP089389.1 See Comparison
NZ_CP083801.1 See Comparison
NZ_CP024493.1 See Comparison
CP024486.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore