Plasmid NZ_LR890293.1

Sequence

Nucleotide Information

Accession NZ_LR890293.1
Description Klebsiella pneumoniae strain KSB1_1B plasmid 3, complete sequence
Source refseq
Topology circular
Length 113743 bp
GC Content 0.49 %
Created at NCBI Oct. 30, 2020



Assembly

Genome Data Information

Accession GCF_904863435.1
Assembly Coverage 49


Biosample

Curated Collection Information
Accession 7738870

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 37.81S;144.96E
Original Query Type coordinates
Coordinates (Lat/Lon) -37.81/144.96
Address Argus Centre, 300, La Trobe Street, Melbourne, City of Melbourne, Victoria, 3000, Australia

ECOSYSTEM
Original Query Homo sapiens,Rectal swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Asymptomatic carriage
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGmembrane proteincopy
PGAGhypothetical proteincopy
PGAGtail fiber domain-containing proteincopy
PGAGphage tail proteincopy
PGAGtail assembly proteincopy
PGAGC40 family peptidasecopy
PGAGphage minor tail protein Lcopy
PGAGphage tail proteincopy
SourceElement NameDisplaySequenceFavorite
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000100__NZ_CP016161_00012IncFIB7858679803plus98.0310002117
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
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Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2