Plasmid NZ_LR890213.1

Sequence

Nucleotide Information

Accession NZ_LR890213.1
Description Klebsiella pneumoniae isolate INF022-sc-2279895 plasmid 5, complete sequence
Source refseq
Topology circular
Length 3271 bp
GC Content 0.47 %
Created at NCBI Oct. 30, 2020



Assembly

Genome Data Information

Accession GCF_904863055.1
Assembly Coverage 55


Biosample

Curated Collection Information
Accession 4106245

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Australia
Original Query Type name
Coordinates (Lat/Lon) -24.78/134.76
Address Australia

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query diseased
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGRop family plasmid primer RNA-binding proteincopy
PGAGhelix-turn-helix domain-containing proteincopy
PGAGDUF1778 domain-containing proteincopy
PGAGGNAT family N-acetyltransferasecopy
MOB-typerColRNAI_rep_cluster_1987copy
SourceElement NameDisplaySequenceFavorite
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconCP041116_00002ColRNAI_rep_cluster_198726443125minus88.683921.2800000000000002e-163582
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
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Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2