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v. 2024_05_31_v2
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Typing
Plasmid NZ_LR135379.1
Sequence
Nucleotide Information
Accession
NZ_LR135379.1
Description
Enterococcus faecium isolate E8172 plasmid 8
Source
refseq
Topology
linear
Length
4466 bp
GC Content
0.32 %
Created at NCBI
Jan. 2, 2019
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Enterococcus faecium (1352)
Lineage
Superkingdom
Bacteria (2)
Phylum
Bacillota (1239)
Class
Bacilli (91061)
Order
Lactobacillales (186826)
Family
Enterococcaceae (81852)
Genus
Enterococcus (1350)
Species
Enterococcus_faecium (1352)
Strain
Assembly
Genome Data Information
Accession
GCF_900639555.1
Assembly Coverage
71
Biosample
Curated Collection Information
Accession
10007467
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
Netherlands
Original Query Type
name
Coordinates (Lat/Lon)
52.24/5.53
Address
Netherlands
ECOSYSTEM
Original Query
None
Classification
None
Host-associated Taxon
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_LR135383.1
NZ_LR135382.1
NZ_LR135381.1
NZ_LR135380.1
NZ_LR135378.1
NZ_LR135377.1
NZ_LR135376.1
NZ_LR135375.1
NZ_LR135374.1
NZ_LR135373.1
Similar Plasmids
based on Mash distance
NZ_CP065758.1
See Comparison
CP066211.1
See Comparison
NZ_CP072591.1
See Comparison
NZ_CP065758.1
See Comparison
NZ_CP065758.1
See Comparison
CP066211.1
See Comparison
NZ_CP072591.1
See Comparison
CP066211.1
See Comparison
NZ_LR135379.1
See Comparison
NZ_CP065758.1
See Comparison
CP066211.1
See Comparison
NZ_CP072591.1
See Comparison
NZ_CP072591.1
See Comparison
NZ_CP065758.1
See Comparison
CP066211.1
See Comparison
NZ_CP072591.1
See Comparison
NZ_CP065758.1
See Comparison
CP066211.1
See Comparison
NZ_CP072591.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore