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v. 2024_05_31_v2
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Typing
Plasmid NZ_LR134113.1
Sequence
Nucleotide Information
Accession
NZ_LR134113.1
Description
Enterococcus faecium isolate E6043 plasmid 0
Source
refseq
Topology
linear
Length
7165 bp
GC Content
0.34 %
Created at NCBI
Dec. 19, 2018
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Enterococcus faecium (1352)
Lineage
Superkingdom
Bacteria (2)
Phylum
Bacillota (1239)
Class
Bacilli (91061)
Order
Lactobacillales (186826)
Family
Enterococcaceae (81852)
Genus
Enterococcus (1350)
Species
Enterococcus_faecium (1352)
Strain
Assembly
Genome Data Information
Accession
GCF_900635415.1
Assembly Coverage
107
Biosample
Curated Collection Information
Accession
10006657
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
None
Original Query Type
None
Coordinates (Lat/Lon)
Address
None
ECOSYSTEM
Original Query
None
Classification
None
Host-associated Taxon
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_LR134112.1
NZ_LR134111.1
NZ_LR134110.1
NZ_LR134109.1
NZ_LR134108.1
NZ_LR134107.1
NZ_LR134106.1
Similar Plasmids
based on Mash distance
CP063591.1
See Comparison
CP063560.1
See Comparison
CP063591.1
See Comparison
NZ_LR135232.1
See Comparison
NZ_LR134113.1
See Comparison
NZ_CP066601.1
See Comparison
NZ_CP066588.1
See Comparison
NZ_CP066677.1
See Comparison
CP063591.1
See Comparison
CP063560.1
See Comparison
NZ_LR135232.1
See Comparison
NZ_CP066601.1
See Comparison
NZ_CP066588.1
See Comparison
NZ_CP066677.1
See Comparison
CP063560.1
See Comparison
NZ_CP066601.1
See Comparison
NZ_LR135232.1
See Comparison
NZ_CP066588.1
See Comparison
NZ_CP066677.1
See Comparison
NZ_CP066601.1
See Comparison
CP063591.1
See Comparison
CP063560.1
See Comparison
NZ_LR135232.1
See Comparison
NZ_CP066588.1
See Comparison
NZ_CP066677.1
See Comparison
CP063591.1
See Comparison
CP063560.1
See Comparison
NZ_CP066601.1
See Comparison
NZ_CP066588.1
See Comparison
NZ_CP066677.1
See Comparison
NZ_LR135232.1
See Comparison
NZ_CP066601.1
See Comparison
NZ_CP066588.1
See Comparison
NZ_CP066677.1
See Comparison
CP063591.1
See Comparison
CP063560.1
See Comparison
NZ_LR135232.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore