Plasmid NZ_LC543864.1
Sequence
Nucleotide Information
| Accession | NZ_LC543864.1 |
|---|---|
| Description | Serratia marcescens strain Sm4 plasmid pSm4Col, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 10060 bp |
| GC Content | 0.55 % |
| Created at NCBI | Nov. 17, 2020 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Serratia marcescens (615) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Yersiniaceae (1903411) |
| Genus | Serratia (613) |
| Species | Serratia_marcescens (615) |
| Strain |
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | colicin E3-like toxin immunity protein | copy | ||
| PGAG | colicin-like bacteriocin tRNase domain-containing protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | tolA | copy | ||
| PGAG | TonB family protein | copy | ||
| PGAG | CopG family ribbon-helix-helix protein | copy | ||
| PGAG | type II toxin-antitoxin system RelE/ParE family toxin | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | Rop family plasmid primer RNA-binding protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 16 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Biosynthetic Gene Clusters
based on ANTISMASH
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000003__NC_002119_00001 | ColRNAI_rep_cluster_1857 | 9145 | 9724 | plus | 98.282 | 100 | 0 | 1018 |
| relaxase | NC_009793_00003 | MOBC | 5651 | 6379 | minus | 93.416 | 100 | 1.34e-140 | 441 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 2 of 2 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |