Plasmid NZ_KY595964.1

Sequence

Nucleotide Information

Accession NZ_KY595964.1
Description Enterococcus faecium strain VREfm1 plasmid pPEC012, complete sequence
Source refseq
Topology circular
Length 4465 bp
GC Content 0.32 %
Created at NCBI June 3, 2020



Biosample

Curated Collection Information
Accession 14227886

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Hungary
Original Query Type name
Coordinates (Lat/Lon) 47.18/19.51
Address Hungary

ECOSYSTEM
Original Query Homo sapiens,wound
Classification host_associated,wound
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP072725.1 See Comparison
NZ_CP072736.1 See Comparison
NZ_CP071965.1 See Comparison
NZ_CP064349.1 See Comparison
NZ_CP066408.1 See Comparison
NZ_CP072725.1 See Comparison
NZ_CP061822.1 See Comparison
NZ_CP059790.1 See Comparison
NZ_CP059811.1 See Comparison
NZ_CP059828.1 See Comparison
NZ_CP072736.1 See Comparison
NZ_CP064349.1 See Comparison
NZ_CP071965.1 See Comparison
NZ_CP066408.1 See Comparison
NZ_CP071965.1 See Comparison
NZ_CP061822.1 See Comparison
NZ_CP059790.1 See Comparison
NZ_CP059811.1 See Comparison
NZ_CP059828.1 See Comparison
NZ_CP072725.1 See Comparison
NZ_CP072736.1 See Comparison
NZ_CP072725.1 See Comparison
NZ_CP066408.1 See Comparison
NZ_CP061822.1 See Comparison
NZ_CP059790.1 See Comparison
NZ_CP059811.1 See Comparison
NZ_CP059828.1 See Comparison
NZ_CP064349.1 See Comparison
NZ_CP072736.1 See Comparison
NZ_CP066408.1 See Comparison
NZ_CP071965.1 See Comparison
NZ_CP072725.1 See Comparison
NZ_CP064349.1 See Comparison
NZ_CP061822.1 See Comparison
NZ_CP059828.1 See Comparison
NZ_CP059790.1 See Comparison
NZ_CP059811.1 See Comparison
NZ_CP072736.1 See Comparison
NZ_CP066408.1 See Comparison
NZ_CP071965.1 See Comparison
NZ_KY595964.1 See Comparison
NZ_CP064349.1 See Comparison
NZ_CP059790.1 See Comparison
NZ_CP061822.1 See Comparison
NZ_CP059828.1 See Comparison
NZ_CP059811.1 See Comparison
NZ_CP071965.1 See Comparison
NZ_CP072725.1 See Comparison
NZ_CP072736.1 See Comparison
NZ_CP059790.1 See Comparison
NZ_CP066408.1 See Comparison
NZ_CP061822.1 See Comparison
NZ_CP064349.1 See Comparison
NZ_CP059828.1 See Comparison
NZ_CP059811.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore