Plasmid NZ_KM210086.1

Sequence

Nucleotide Information

Accession NZ_KM210086.1
Description Acinetobacter lwoffii strain JN49-1 plasmid pNDM-JN01, complete sequence
Source refseq
Topology circular
Length 41084 bp
GC Content 0.38 %
Created at NCBI May 18, 2020



Biosample

Curated Collection Information
Accession 14226449

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,JiNan
Original Query Type name
Coordinates (Lat/Lon) 36.65/117.11
Address China,JiNan

ECOSYSTEM
Original Query Homo sapiens,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

CP079750.1 See Comparison
NZ_MW073138.1 See Comparison
NZ_CP027532.1 See Comparison
NZ_OR515640.1 See Comparison
LC732581.1 See Comparison
NZ_CP121779.1 See Comparison
LC771431.1 See Comparison
NZ_AP023079.1 See Comparison
NZ_KM210088.1 See Comparison
NZ_LC483156.1 See Comparison
NZ_MK053934.1 See Comparison
NZ_CP045197.1 See Comparison
NZ_CP045133.1 See Comparison
NZ_CP045130.1 See Comparison
NZ_MT002974.1 See Comparison
NZ_MW073138.1 See Comparison
NZ_CP027532.1 See Comparison
CP079750.1 See Comparison
NZ_CP121779.1 See Comparison
NZ_OR515640.1 See Comparison
LC732581.1 See Comparison
NZ_LC483156.1 See Comparison
NZ_AP023079.1 See Comparison
LC771431.1 See Comparison
NZ_KM210088.1 See Comparison
NZ_MK053934.1 See Comparison
CP079750.1 See Comparison
NZ_MT002974.1 See Comparison
NZ_CP045197.1 See Comparison
NZ_CP045133.1 See Comparison
NZ_CP045130.1 See Comparison
NZ_MW073138.1 See Comparison
NZ_CP121779.1 See Comparison
NZ_OR515640.1 See Comparison
NZ_CP027532.1 See Comparison
NZ_MT002974.1 See Comparison
LC771431.1 See Comparison
LC732581.1 See Comparison
NZ_AP023079.1 See Comparison
NZ_LC483156.1 See Comparison
NZ_KM210088.1 See Comparison
NZ_MK053934.1 See Comparison
NZ_CP045197.1 See Comparison
NZ_CP045133.1 See Comparison
NZ_CP045130.1 See Comparison
LC732581.1 See Comparison
CP079750.1 See Comparison
NZ_CP027532.1 See Comparison
NZ_CP121779.1 See Comparison
NZ_MW073138.1 See Comparison
NZ_OR515640.1 See Comparison
LC771431.1 See Comparison
NZ_KM210088.1 See Comparison
NZ_AP023079.1 See Comparison
NZ_LC483156.1 See Comparison
NZ_MK053934.1 See Comparison
NZ_CP045197.1 See Comparison
NZ_CP045133.1 See Comparison
NZ_CP045130.1 See Comparison
NZ_MW073138.1 See Comparison
NZ_MT002974.1 See Comparison
CP079750.1 See Comparison
NZ_OR515640.1 See Comparison
NZ_CP027532.1 See Comparison
NZ_LC483156.1 See Comparison
NZ_CP121779.1 See Comparison
LC732581.1 See Comparison
LC771431.1 See Comparison
NZ_AP023079.1 See Comparison
CP079750.1 See Comparison
NZ_KM210088.1 See Comparison
NZ_MK053934.1 See Comparison
NZ_MT002974.1 See Comparison
NZ_CP045197.1 See Comparison
NZ_CP045133.1 See Comparison
NZ_CP045130.1 See Comparison
NZ_CP121779.1 See Comparison
NZ_MW073138.1 See Comparison
NZ_CP027532.1 See Comparison
NZ_OR515640.1 See Comparison
NZ_KM210088.1 See Comparison
LC732581.1 See Comparison
NZ_LC483156.1 See Comparison
LC771431.1 See Comparison
NZ_AP023079.1 See Comparison
NZ_MK053934.1 See Comparison
NZ_CP045197.1 See Comparison
NZ_CP045133.1 See Comparison
NZ_CP045130.1 See Comparison
NZ_MT002974.1 See Comparison
NZ_CP027532.1 See Comparison
NZ_MW073138.1 See Comparison
CP079750.1 See Comparison
NZ_OR515640.1 See Comparison
NZ_CP121779.1 See Comparison
LC732581.1 See Comparison
NZ_LC483156.1 See Comparison
LC771431.1 See Comparison
NZ_AP023079.1 See Comparison
NZ_MK053934.1 See Comparison
NZ_KM210086.1 See Comparison
NZ_CP045197.1 See Comparison
NZ_KM210088.1 See Comparison
NZ_CP045133.1 See Comparison
NZ_CP045130.1 See Comparison
NZ_MT002974.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2