Plasmid NZ_JX982605.1

Sequence

Nucleotide Information

Accession NZ_JX982605.1
Description Proteus mirabilis strain CGP180 plasmid pCGP180, complete sequence
Source refseq
Topology circular
Length 4270 bp
GC Content 0.47 %
Created at NCBI June 8, 2020



Biosample

Curated Collection Information
Accession 14225901

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China
Original Query Type name
Coordinates (Lat/Lon) 34.41/86.03
Address China

ECOSYSTEM
Original Query Canis lupus familiaris,feces
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Canis lupus (9615)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_JX982606.1 See Comparison
NZ_JQ776501.1 See Comparison
NZ_JQ776502.1 See Comparison
NC_021512.1 See Comparison
NC_021522.1 See Comparison
NZ_JX982606.1 See Comparison
NZ_CP147091.1 See Comparison
NZ_CP147115.1 See Comparison
NC_021523.1 See Comparison
NC_011897.1 See Comparison
NZ_JQ776501.1 See Comparison
NZ_JQ776502.1 See Comparison
NC_021512.1 See Comparison
NC_021522.1 See Comparison
NZ_CP147091.1 See Comparison
NC_021523.1 See Comparison
NC_011897.1 See Comparison
NZ_CP147115.1 See Comparison
NZ_CP147115.1 See Comparison
NZ_JX982606.1 See Comparison
NZ_JQ776501.1 See Comparison
NZ_JQ776502.1 See Comparison
NC_021512.1 See Comparison
NC_021522.1 See Comparison
NC_021523.1 See Comparison
NC_011897.1 See Comparison
NC_021512.1 See Comparison
NZ_CP147091.1 See Comparison
NZ_JX982606.1 See Comparison
NZ_JQ776501.1 See Comparison
NZ_JQ776502.1 See Comparison
NC_021522.1 See Comparison
NZ_CP147091.1 See Comparison
NC_021523.1 See Comparison
NC_011897.1 See Comparison
NZ_CP147115.1 See Comparison
NZ_JX982605.1 See Comparison
NZ_JX982606.1 See Comparison
NZ_JQ776501.1 See Comparison
NZ_JQ776502.1 See Comparison
NC_021512.1 See Comparison
NC_021522.1 See Comparison
NZ_CP147091.1 See Comparison
NC_021523.1 See Comparison
NC_011897.1 See Comparison
NZ_CP147115.1 See Comparison
NZ_JX982606.1 See Comparison
NZ_JQ776501.1 See Comparison
NZ_JQ776502.1 See Comparison
NC_021523.1 See Comparison
NC_021512.1 See Comparison
NC_021522.1 See Comparison
NC_011897.1 See Comparison
NZ_CP147091.1 See Comparison
NZ_CP147115.1 See Comparison


Identical Plasmids

100% Sequence Identity






Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore