Plasmid NZ_EU418923.1

Sequence

Nucleotide Information

Accession NZ_EU418923.1
Description Escherichia coli strain JIE113 plasmid pJIE113, complete sequence
Source refseq
Topology linear
Length 91205 bp
GC Content 0.50 %
Created at NCBI June 3, 2020



Biosample

Curated Collection Information
Accession 14225766

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query None
Original Query Type None
Coordinates (Lat/Lon)
Address None

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NC_022742.1 See Comparison
NC_018659.1 See Comparison
NZ_CP031903.1 See Comparison
NZ_CP029903.1 See Comparison
LT985289.1 See Comparison
NZ_CP023534.1 See Comparison
NZ_LT985295.1 See Comparison
NZ_CP136553.1 See Comparison
LC567096.1 See Comparison
LC567071.1 See Comparison
LC567068.1 See Comparison
NZ_MK238490.1 See Comparison
NC_018659.1 See Comparison
NC_022742.1 See Comparison
NZ_CP029903.1 See Comparison
NZ_CP031903.1 See Comparison
LC567096.1 See Comparison
LT985289.1 See Comparison
NZ_CP023534.1 See Comparison
NZ_CP136553.1 See Comparison
LC567071.1 See Comparison
LC567068.1 See Comparison
NZ_MK238490.1 See Comparison
NZ_CP031903.1 See Comparison
NZ_LT985295.1 See Comparison
NC_018659.1 See Comparison
NC_022742.1 See Comparison
LT985289.1 See Comparison
NZ_CP029903.1 See Comparison
NZ_CP023534.1 See Comparison
NC_022742.1 See Comparison
LC567096.1 See Comparison
LC567071.1 See Comparison
LC567068.1 See Comparison
NZ_CP136553.1 See Comparison
NZ_MK238490.1 See Comparison
NZ_LT985295.1 See Comparison
NZ_CP029903.1 See Comparison
NC_018659.1 See Comparison
NZ_CP031903.1 See Comparison
NZ_LT985295.1 See Comparison
NZ_CP136553.1 See Comparison
NZ_MK238490.1 See Comparison
LT985289.1 See Comparison
NZ_CP023534.1 See Comparison
LC567096.1 See Comparison
LC567071.1 See Comparison
LC567068.1 See Comparison
NZ_EU418923.1 See Comparison
LC567071.1 See Comparison
NZ_CP031903.1 See Comparison
NZ_CP029903.1 See Comparison
NC_022742.1 See Comparison
NC_018659.1 See Comparison
LT985289.1 See Comparison
NZ_CP023534.1 See Comparison
NZ_CP136553.1 See Comparison
LC567068.1 See Comparison
NZ_MK238490.1 See Comparison
LC567096.1 See Comparison
NC_022742.1 See Comparison
NZ_LT985295.1 See Comparison
NZ_MK238490.1 See Comparison
NC_018659.1 See Comparison
NZ_CP031903.1 See Comparison
NZ_CP029903.1 See Comparison
LT985289.1 See Comparison
NZ_CP023534.1 See Comparison
NZ_CP136553.1 See Comparison
LC567096.1 See Comparison
LC567071.1 See Comparison
LC567068.1 See Comparison
NZ_LT985295.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore