Plasmid NZ_CP154374.1

Sequence

Nucleotide Information

Accession NZ_CP154374.1
Description Acinetobacter baumannii strain NCSR_106 plasmid pNCSR_106-4, complete sequence
Source refseq
Topology circular
Length 8731 bp
GC Content 0.34 %
Created at NCBI May 8, 2024



Assembly

Genome Data Information

Accession GCF_039545565.1
Assembly Coverage 60


Biosample

Curated Collection Information
Accession 41107056

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 21.00N;105.83E
Original Query Type coordinates
Coordinates (Lat/Lon) 21.00/105.83
Address FPT Shop, 173, Đường Trường Chinh, Phường Khương Mai, Thanh Xuan District, Hà Nội, 10181, Vietnam

ECOSYSTEM
Original Query Homo sapiens,Carriage
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



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based on Mash distance

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NZ_CP115631.1 See Comparison
NZ_CP115628.1 See Comparison
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NZ_CP152385.1 See Comparison
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NZ_CP121613.1 See Comparison
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NZ_CP050527.1 See Comparison
NZ_CP050414.1 See Comparison
NZ_CP050393.1 See Comparison
NZ_CP050391.1 See Comparison
NZ_CP050524.1 See Comparison
NZ_CP050411.1 See Comparison
NZ_CP050422.1 See Comparison
CP119234.1 See Comparison
NZ_CP050913.1 See Comparison
NZ_CP050918.1 See Comparison
NZ_CP050910.1 See Comparison
NZ_CP050906.1 See Comparison
NZ_CP070364.1 See Comparison
NZ_CP069852.1 See Comparison
NZ_CP066231.1 See Comparison
NZ_CP066240.1 See Comparison
NZ_CP066017.1 See Comparison
NZ_CP060012.1 See Comparison
NZ_CP060014.1 See Comparison
NZ_CP117729.1 See Comparison
NZ_CP113082.1 See Comparison
NZ_CP087350.1 See Comparison
NZ_CP116681.1 See Comparison
NZ_CP116389.1 See Comparison
NZ_CP114382.1 See Comparison
NZ_MK531537.1 See Comparison
NZ_CP104910.1 See Comparison
NZ_CP104906.1 See Comparison
NZ_CP104911.1 See Comparison
NZ_CP087306.1 See Comparison
NZ_CP087305.1 See Comparison
NZ_CP100307.1 See Comparison
CP099794.1 See Comparison
NZ_CP077848.1 See Comparison
NZ_CP077834.1 See Comparison
NZ_CP077839.1 See Comparison
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CP099796.1 See Comparison
NZ_CP020576.1 See Comparison
NZ_CP092486.1 See Comparison
NZ_CP084725.1 See Comparison
NZ_CP084722.1 See Comparison
NZ_CP084728.1 See Comparison
NZ_CP084734.1 See Comparison
NZ_CP084731.1 See Comparison
NZ_CP070360.1 See Comparison
NZ_CP094286.1 See Comparison
NZ_CP091466.1 See Comparison
NZ_CP080456.1 See Comparison
NZ_CP048133.1 See Comparison
NZ_CP071765.1 See Comparison
CP014293.1 See Comparison
NZ_CP008850.1 See Comparison
NZ_CP010782.1 See Comparison
NZ_CP008708.1 See Comparison
AP029034.1 See Comparison
NC_025110.1 See Comparison
CP007578.1 See Comparison
CP007550.1 See Comparison
CP002523.1 See Comparison
NZ_CP030084.1 See Comparison
NZ_CP027124.1 See Comparison
NZ_CP027609.1 See Comparison
NZ_CP027244.1 See Comparison
NZ_CP027529.1 See Comparison
NZ_CP026708.1 See Comparison
NC_011585.2 See Comparison
NZ_CP021786.1 See Comparison
NZ_CP137141.1 See Comparison
NZ_CP137065.1 See Comparison
NZ_CP137067.1 See Comparison
NZ_CP130923.1 See Comparison
NZ_CP131945.1 See Comparison
NZ_CP124679.1 See Comparison
NZ_CP101654.1 See Comparison
NZ_CP131902.1 See Comparison
NZ_CP131900.1 See Comparison
NC_022565.1 See Comparison
NC_021730.1 See Comparison
AP027039.1 See Comparison
NZ_CP121590.1 See Comparison
NZ_CP121630.1 See Comparison
NZ_CP121597.1 See Comparison
NZ_CP121578.1 See Comparison
NZ_CP121584.1 See Comparison
NZ_CP121633.1 See Comparison
NZ_CP121613.1 See Comparison
NZ_CP121628.1 See Comparison
NZ_CP121569.1 See Comparison
NZ_CP121600.1 See Comparison
NZ_CP121580.1 See Comparison
NZ_CP121566.1 See Comparison
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NZ_CP115628.1 See Comparison
NZ_CP155725.1 See Comparison
NZ_CP144251.1 See Comparison
NZ_CP152385.1 See Comparison
NZ_CP147667.1 See Comparison
NZ_CP145435.1 See Comparison
NZ_CP144560.1 See Comparison
NZ_CP144564.1 See Comparison
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CP143263.1 See Comparison
NZ_CP142891.1 See Comparison
NZ_CP142898.1 See Comparison
NZ_CP056785.1 See Comparison
NZ_CP050527.1 See Comparison
NZ_KU869528.1 See Comparison
NZ_MK386683.1 See Comparison
NZ_CP050414.1 See Comparison
NZ_CP050393.1 See Comparison
NZ_CP050391.1 See Comparison
NZ_CP050524.1 See Comparison
NZ_CP051475.1 See Comparison
NZ_CP050402.1 See Comparison
NZ_CP050913.1 See Comparison
NZ_CP050918.1 See Comparison
NZ_CP050910.1 See Comparison
NZ_CP050906.1 See Comparison
NZ_CP050411.1 See Comparison
NZ_CP050422.1 See Comparison
NZ_CP066231.1 See Comparison
NZ_CP069852.1 See Comparison
NZ_CP070364.1 See Comparison
NZ_CP066240.1 See Comparison
NZ_CP066017.1 See Comparison
NZ_CP060012.1 See Comparison
NZ_CP060014.1 See Comparison
NZ_CP116681.1 See Comparison
NZ_MK531537.1 See Comparison
CP119234.1 See Comparison
NZ_CP117729.1 See Comparison
NZ_CP113082.1 See Comparison
NZ_CP116389.1 See Comparison
NZ_CP104910.1 See Comparison
NZ_CP114382.1 See Comparison
NZ_CP104906.1 See Comparison
NZ_CP104911.1 See Comparison
NZ_CP087350.1 See Comparison
NZ_CP087306.1 See Comparison
NZ_CP087305.1 See Comparison
NZ_CP092486.1 See Comparison
NZ_CP100307.1 See Comparison
CP099794.1 See Comparison
CP099789.1 See Comparison
CP099792.1 See Comparison
CP099796.1 See Comparison
NZ_CP077848.1 See Comparison
NZ_CP077834.1 See Comparison
NZ_CP077839.1 See Comparison
NZ_CP070360.1 See Comparison
NZ_CP094286.1 See Comparison
CP002523.1 See Comparison
NZ_CP084725.1 See Comparison
NZ_CP084722.1 See Comparison
NZ_CP084728.1 See Comparison
NZ_CP084734.1 See Comparison
NZ_CP084731.1 See Comparison
NZ_CP048133.1 See Comparison
NZ_CP071765.1 See Comparison
NZ_CP020576.1 See Comparison
CP014293.1 See Comparison
NZ_CP008850.1 See Comparison
NZ_CP091466.1 See Comparison
NZ_CP080456.1 See Comparison
NZ_CP008708.1 See Comparison
NZ_CP010782.1 See Comparison
NC_025110.1 See Comparison
CP007578.1 See Comparison
CP007550.1 See Comparison
NC_022565.1 See Comparison
NC_021730.1 See Comparison
NZ_CP027124.1 See Comparison
NZ_CP030084.1 See Comparison
NZ_CP027609.1 See Comparison
NZ_CP027244.1 See Comparison
NZ_CP027529.1 See Comparison
NZ_CP026708.1 See Comparison
NZ_CP131902.1 See Comparison
NZ_CP021786.1 See Comparison
NZ_CP130923.1 See Comparison
NZ_CP131945.1 See Comparison
AP027039.1 See Comparison
NZ_CP124679.1 See Comparison
NC_011585.2 See Comparison
NZ_CP137141.1 See Comparison
NZ_CP137065.1 See Comparison
NZ_CP137067.1 See Comparison
NZ_CP121590.1 See Comparison
NZ_CP121630.1 See Comparison
NZ_CP121597.1 See Comparison
NZ_CP121578.1 See Comparison
NZ_CP121584.1 See Comparison
NZ_CP121633.1 See Comparison
NZ_CP121613.1 See Comparison
NZ_CP121628.1 See Comparison
NZ_CP121569.1 See Comparison
NZ_CP121600.1 See Comparison
NZ_CP121580.1 See Comparison
NZ_CP121566.1 See Comparison
NZ_CP121558.1 See Comparison
NZ_CP121587.1 See Comparison
NZ_AP025534.1 See Comparison
NZ_CP115631.1 See Comparison
NZ_CP115628.1 See Comparison
NZ_CP155725.1 See Comparison
NZ_CP101654.1 See Comparison
NZ_CP131900.1 See Comparison
CP058626.1 See Comparison
NZ_CP144251.1 See Comparison
NZ_CP152385.1 See Comparison
NZ_CP147667.1 See Comparison
AP029034.1 See Comparison
NZ_CP145435.1 See Comparison
NZ_CP144560.1 See Comparison
NZ_CP144564.1 See Comparison
CP143263.1 See Comparison
NZ_CP142891.1 See Comparison
NZ_CP142898.1 See Comparison
NZ_CP056785.1 See Comparison
NZ_CP051475.1 See Comparison
NZ_CP050402.1 See Comparison
NZ_CP050527.1 See Comparison
NZ_CP050414.1 See Comparison
NZ_CP050393.1 See Comparison
NZ_CP050391.1 See Comparison
NZ_CP050524.1 See Comparison
NZ_CP050411.1 See Comparison
NZ_CP050422.1 See Comparison
NZ_CP050913.1 See Comparison
NZ_CP050918.1 See Comparison
NZ_CP050910.1 See Comparison
NZ_CP050906.1 See Comparison
NZ_CP069852.1 See Comparison
NZ_KU869528.1 See Comparison
NZ_MK386683.1 See Comparison
NZ_CP070364.1 See Comparison
NZ_CP066231.1 See Comparison
NZ_CP066017.1 See Comparison
NZ_CP060012.1 See Comparison
NZ_CP060014.1 See Comparison
NZ_CP066240.1 See Comparison
NZ_CP114382.1 See Comparison
CP119234.1 See Comparison
NZ_CP117729.1 See Comparison
NZ_CP113082.1 See Comparison
NZ_CP116681.1 See Comparison
NZ_CP116389.1 See Comparison
NZ_MK531537.1 See Comparison
NZ_CP104910.1 See Comparison
NZ_CP104906.1 See Comparison
NZ_CP104911.1 See Comparison
NZ_CP070360.1 See Comparison
NZ_CP087350.1 See Comparison
NZ_CP087306.1 See Comparison
NZ_CP087305.1 See Comparison
NZ_CP100307.1 See Comparison
CP099794.1 See Comparison
CP099789.1 See Comparison
CP099792.1 See Comparison
CP099796.1 See Comparison
NZ_CP077848.1 See Comparison
NZ_CP077834.1 See Comparison
NZ_CP077839.1 See Comparison
NZ_CP094286.1 See Comparison
NZ_CP084725.1 See Comparison
NZ_CP092486.1 See Comparison
NZ_CP091466.1 See Comparison
NZ_CP084722.1 See Comparison
NZ_CP084728.1 See Comparison
NZ_CP084734.1 See Comparison
NZ_CP084731.1 See Comparison
NZ_CP080456.1 See Comparison
NZ_CP048133.1 See Comparison
NZ_CP071765.1 See Comparison
NZ_CP020576.1 See Comparison


Identical Plasmids

100% Sequence Identity

  • Sequence
    • Accession: NZ_CP144560.1
    • Description: Acinetobacter baumannii strain AB5075 plasmid p1, complete sequence
    • Source: refseq
    • Created at NCBI: April 5, 2024

  • Host Taxonomy
    Assigned Host: Acinetobacter baumannii (470)
  • Biosample
    Accession: 39855183
  • GEOGRAPHICAL INFORMATION
    • Original Query: 38.976556N;77.02875W
    • Original Query Type: coordinates
    • Address: Ward 4, Washington, District of Columbia, 20012, United States
    • Coordinates (Lat/Lon): 38.98/-77.03
  • ECOSYSTEM
    • Original Query: Homo sapiens,tibia/osteomyelitis of diabetes patient
    • Classification: disease,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Acinetobacter baumannii osteomyelitis
    • DOID/SYMP:
      • Osteomyelitis (DOID:1019 )
        • A bone inflammation disease that has_material_basis_in infection located_in bone or located_in bone marrow.
        • Has_material_basis_in: ['infection located_in bone or located_in bone marrow']
      • Acinetobacter infectious disease (DOID:3091 )
        • An opportunistic bacterial infectious disease that has_material_basis_in Acinetobacter.
        • Has_material_basis_in: ['acinetobacter']

    • Visualization

    PNG JSON













  • Sequence
    • Accession: NZ_CP050393.1
    • Description: Acinetobacter baumannii strain VB11737 plasmid pVB11737_2, complete sequence
    • Source: refseq
    • Created at NCBI: May 2, 2020

  • Host Taxonomy
    Assigned Host: Acinetobacter baumannii (470)
  • Biosample
    Accession: 14410107
  • GEOGRAPHICAL INFORMATION
    • Original Query: 12.9246N;79.1348E
    • Original Query Type: coordinates
    • Address: Christian Medical College Hospital, Ida Scudder Road, Sathuvachari, Vellore, Vellore District, Tamil Nadu, 632004, India
    • Coordinates (Lat/Lon): 12.92/79.13
  • ECOSYSTEM
    • Original Query: Homo sapiens,blood
    • Classification: blood,circulatory_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Blood stream
    • DOID/SYMP:
      • Disease infectious agent (DOID:0050117 )
        • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

    • Visualization

    PNG JSON

  • Sequence
    • Accession: NZ_CP050402.1
    • Description: Acinetobacter baumannii strain VB2181 plasmid pVB2181, complete sequence
    • Source: refseq
    • Created at NCBI: May 2, 2020

  • Host Taxonomy
    Assigned Host: Acinetobacter baumannii (470)
  • Biosample
    Accession: 14410138
  • GEOGRAPHICAL INFORMATION
    • Original Query: 12.9246N;79.1348E
    • Original Query Type: coordinates
    • Address: Christian Medical College Hospital, Ida Scudder Road, Sathuvachari, Vellore, Vellore District, Tamil Nadu, 632004, India
    • Coordinates (Lat/Lon): 12.92/79.13
  • ECOSYSTEM
    • Original Query: Homo sapiens,sputum
    • Classification: host_associated,respiratory_system
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Pneumonia
    • DOID/SYMP:
      • Pneumonia (DOID:552 )
        • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.

    • Visualization

    PNG JSON

  • Sequence
    • Accession: NZ_CP050411.1
    • Description: Acinetobacter baumannii strain PM1912235 plasmid pPM192235_1, complete sequence
    • Source: refseq
    • Created at NCBI: May 2, 2020

  • Host Taxonomy
    Assigned Host: Acinetobacter baumannii (470)
  • Biosample
    Accession: 14420246
  • GEOGRAPHICAL INFORMATION
    • Original Query: 28.5659N;77.2111E
    • Original Query Type: coordinates
    • Address: All India Institute of Medical Sciences (AIIMS), New Delhi, Gautam Nagar Road, Yusuf Sarai Market, Yusuf Sarai, New Delhi, Defence Colony Tehsil, South East Delhi District, Delhi, 110029, India
    • Coordinates (Lat/Lon): 28.57/77.21
  • ECOSYSTEM
    • Original Query: Homo sapiens,Pus
    • Classification: host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Wound infection
    • DOID/SYMP:
      • Disease infectious agent (DOID:0050117 )
        • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

    • Visualization

    PNG JSON

  • Sequence
    • Accession: NZ_CP050391.1
    • Description: Acinetobacter baumannii strain VB723 plasmid pVB723_1, complete sequence
    • Source: refseq
    • Created at NCBI: May 2, 2020

  • Host Taxonomy
    Assigned Host: Acinetobacter baumannii (470)
  • Biosample
    Accession: 14409813
  • GEOGRAPHICAL INFORMATION
    • Original Query: 12.9246N;79.1348E
    • Original Query Type: coordinates
    • Address: Christian Medical College Hospital, Ida Scudder Road, Sathuvachari, Vellore, Vellore District, Tamil Nadu, 632004, India
    • Coordinates (Lat/Lon): 12.92/79.13
  • ECOSYSTEM
    • Original Query: Homo sapiens,blood
    • Classification: blood,circulatory_system,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Bloodstream infection
    • DOID/SYMP:
      • Disease infectious agent (DOID:0050117 )
        • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

    • Visualization

    PNG JSON

  • Sequence
    • Accession: NZ_CP050527.1
    • Description: Acinetobacter baumannii strain VB2139 plasmid pVB2139_1, complete sequence
    • Source: refseq
    • Created at NCBI: May 2, 2020

  • Host Taxonomy
    Assigned Host: Acinetobacter baumannii (470)
  • Biosample
    Accession: 14414747
  • GEOGRAPHICAL INFORMATION
    • Original Query: 12.9246N;79.1348E
    • Original Query Type: coordinates
    • Address: Christian Medical College Hospital, Ida Scudder Road, Sathuvachari, Vellore, Vellore District, Tamil Nadu, 632004, India
    • Coordinates (Lat/Lon): 12.92/79.13
  • ECOSYSTEM
    • Original Query: Homo sapiens,sputum
    • Classification: host_associated,respiratory_system
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: pneumonia
    • DOID/SYMP:
      • Pneumonia (DOID:552 )
        • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.

    • Visualization

    PNG JSON

  • Sequence
    • Accession: NZ_CP050422.1
    • Description: Acinetobacter baumannii strain VB2200 plasmid pVB2200_1, complete sequence
    • Source: refseq
    • Created at NCBI: May 2, 2020

  • Host Taxonomy
    Assigned Host: Acinetobacter baumannii (470)
  • Biosample
    Accession: 14415334
  • GEOGRAPHICAL INFORMATION
    • Original Query: 12.9246N;79.1348E
    • Original Query Type: coordinates
    • Address: Christian Medical College Hospital, Ida Scudder Road, Sathuvachari, Vellore, Vellore District, Tamil Nadu, 632004, India
    • Coordinates (Lat/Lon): 12.92/79.13
  • ECOSYSTEM
    • Original Query: Homo sapiens,sputum
    • Classification: host_associated,respiratory_system
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: pneumonia
    • DOID/SYMP:
      • Pneumonia (DOID:552 )
        • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.

    • Visualization

    PNG JSON

  • Sequence
    • Accession: NZ_CP051475.1
    • Description: Acinetobacter baumannii strain VB2107 plasmid pVB2107_1, complete sequence
    • Source: refseq
    • Created at NCBI: May 2, 2020

  • Host Taxonomy
    Assigned Host: Acinetobacter baumannii (470)
  • Biosample
    Accession: 14414778
  • GEOGRAPHICAL INFORMATION
    • Original Query: 12.9246N;79.1348E
    • Original Query Type: coordinates
    • Address: Christian Medical College Hospital, Ida Scudder Road, Sathuvachari, Vellore, Vellore District, Tamil Nadu, 632004, India
    • Coordinates (Lat/Lon): 12.92/79.13
  • ECOSYSTEM
    • Original Query: Homo sapiens,sputum
    • Classification: host_associated,respiratory_system
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: pneumonia
    • DOID/SYMP:
      • Pneumonia (DOID:552 )
        • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.

    • Visualization

    PNG JSON

  • Sequence
    • Accession: NZ_CP050913.1
    • Description: Acinetobacter baumannii strain DT-Ab020 plasmid unnamed2, complete sequence
    • Source: refseq
    • Created at NCBI: April 13, 2020

  • Host Taxonomy
    Assigned Host: Acinetobacter baumannii (470)
  • Biosample
    Accession: 14308864
  • GEOGRAPHICAL INFORMATION
    • Original Query: 39.9N;116.4E
    • Original Query Type: coordinates
    • Address: China Post, Zhengyi Avenue, Donghuamen, 首都功能核心区, Dongcheng District, Beijing, 100010, China
    • Coordinates (Lat/Lon): 39.90/116.40
  • ECOSYSTEM
    • Original Query: Homo sapiens,sputum
    • Classification: host_associated,respiratory_system
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: infection
    • DOID/SYMP:
      • Disease infectious agent (DOID:0050117 )
        • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

    • Visualization

    PNG JSON

  • Sequence
    • Accession: NZ_CP050918.1
    • Description: Acinetobacter baumannii strain DT-Ab003 plasmid unnamed2, complete sequence
    • Source: refseq
    • Created at NCBI: April 13, 2020

  • Host Taxonomy
    Assigned Host: Acinetobacter baumannii (470)
  • Biosample
    Accession: 14308849
  • GEOGRAPHICAL INFORMATION
    • Original Query: 39.9N;116.4E
    • Original Query Type: coordinates
    • Address: China Post, Zhengyi Avenue, Donghuamen, 首都功能核心区, Dongcheng District, Beijing, 100010, China
    • Coordinates (Lat/Lon): 39.90/116.40
  • ECOSYSTEM
    • Original Query: Homo sapiens,stethoscope
    • Classification: anthropogenic,hospital,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: infection
    • DOID/SYMP:
      • Disease infectious agent (DOID:0050117 )
        • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

    • Visualization

    PNG JSON

  • Sequence
    • Accession: NZ_CP050910.1
    • Description: Acinetobacter baumannii strain DT-Ab022 plasmid unnamed3, complete sequence
    • Source: refseq
    • Created at NCBI: April 13, 2020

  • Host Taxonomy
    Assigned Host: Acinetobacter baumannii (470)
  • Biosample
    Accession: 14308866
  • GEOGRAPHICAL INFORMATION
    • Original Query: 39.9N;116.4E
    • Original Query Type: coordinates
    • Address: China Post, Zhengyi Avenue, Donghuamen, 首都功能核心区, Dongcheng District, Beijing, 100010, China
    • Coordinates (Lat/Lon): 39.90/116.40
  • ECOSYSTEM
    • Original Query: Homo sapiens,sputum
    • Classification: host_associated,respiratory_system
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: infection
    • DOID/SYMP:
      • Disease infectious agent (DOID:0050117 )
        • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

    • Visualization

    PNG JSON

  • Sequence
    • Accession: NZ_CP050906.1
    • Description: Acinetobacter baumannii strain DT-Ab057 plasmid unnamed2, complete sequence
    • Source: refseq
    • Created at NCBI: April 12, 2020

  • Host Taxonomy
    Assigned Host: Acinetobacter baumannii (470)
  • Biosample
    Accession: 14308892
  • GEOGRAPHICAL INFORMATION
    • Original Query: 39.9N;116.4E
    • Original Query Type: coordinates
    • Address: China Post, Zhengyi Avenue, Donghuamen, 首都功能核心区, Dongcheng District, Beijing, 100010, China
    • Coordinates (Lat/Lon): 39.90/116.40
  • ECOSYSTEM
    • Original Query: Homo sapiens,Bronchoalveolar lavage fluid
    • Classification: bronchi,host_associated,respiratory_system
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: infection
    • DOID/SYMP:
      • Disease infectious agent (DOID:0050117 )
        • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

    • Visualization

    PNG JSON

  • Sequence
    • Accession: NZ_CP008708.1
    • Description: Acinetobacter baumannii strain AB5075-UW plasmid p2AB5075, complete sequence
    • Source: refseq
    • Created at NCBI: April 1, 2015

  • Host Taxonomy
    Assigned Host: Acinetobacter baumannii (470)
  • Biosample
    Accession: 2894434
  • GEOGRAPHICAL INFORMATION
    • Original Query: 38.976556N;77.02875W
    • Original Query Type: coordinates
    • Address: Ward 4, Washington, District of Columbia, 20012, United States
    • Coordinates (Lat/Lon): 38.98/-77.03
  • ECOSYSTEM
    • Original Query: Homo sapiens,tibia/osteomyelitis of diabetes patient
    • Classification: disease,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Acinetobacter baumannii osteomyelitis
    • DOID/SYMP:
      • Osteomyelitis (DOID:1019 )
        • A bone inflammation disease that has_material_basis_in infection located_in bone or located_in bone marrow.
        • Has_material_basis_in: ['infection located_in bone or located_in bone marrow']
      • Acinetobacter infectious disease (DOID:3091 )
        • An opportunistic bacterial infectious disease that has_material_basis_in Acinetobacter.
        • Has_material_basis_in: ['acinetobacter']

    • Visualization

    PNG JSON

  • Sequence
    • Accession: NZ_CP101654.1
    • Description: Acinetobacter baumannii strain Aci44 plasmid pAci44a, complete sequence
    • Source: refseq
    • Created at NCBI: May 11, 2024

  • Host Taxonomy
    Assigned Host: Acinetobacter baumannii (470)
  • Biosample
    Accession: 29784748
  • GEOGRAPHICAL INFORMATION
    • Original Query: 13.7666636N;100.52266457E
    • Original Query Type: coordinates
    • Address: Chitralada Royal Villa, Soi Ratchawithi 30, Suan Chitlada Subdistrict, Dusit District, Bangkok, 10300, Thailand
    • Coordinates (Lat/Lon): 13.77/100.52
  • ECOSYSTEM
    • Original Query: Homo sapiens,sputum
    • Classification: host_associated,respiratory_system
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: opportunistic infections
    • DOID/SYMP:
      • Disease infectious agent (DOID:0050117 )
        • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

    • Visualization

    PNG JSON

  • Sequence
    • Accession: NZ_CP144564.1
    • Description: Acinetobacter baumannii strain AB5075 isolate grey variant plasmid p1, complete sequence
    • Source: refseq
    • Created at NCBI: April 5, 2024

  • Host Taxonomy
    Assigned Host: Acinetobacter baumannii (470)
  • Biosample
    Accession: 39855236
  • GEOGRAPHICAL INFORMATION
    • Original Query: 52.45083403N;1.93441646W
    • Original Query Type: coordinates
    • Address: University of Birmingham Edgbaston Campus, Bristol Road, Bournbrook, Selly Oak, Birmingham, West Midlands Combined Authority, England, B5 7SW, United Kingdom
    • Coordinates (Lat/Lon): 52.45/-1.93
  • ECOSYSTEM
    • Original Query: Homo sapiens,Agar plate
    • Classification: cell_culture,host_associated
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Acinetobacter baumannii osteomyelitis
    • DOID/SYMP:
      • Osteomyelitis (DOID:1019 )
        • A bone inflammation disease that has_material_basis_in infection located_in bone or located_in bone marrow.
        • Has_material_basis_in: ['infection located_in bone or located_in bone marrow']
      • Acinetobacter infectious disease (DOID:3091 )
        • An opportunistic bacterial infectious disease that has_material_basis_in Acinetobacter.
        • Has_material_basis_in: ['acinetobacter']

    • Visualization

    PNG JSON














  • Sequence
    • Accession: CP058626.1
    • Description: Acinetobacter baumannii strain ATCC BAA1605 plasmid unnamed, complete sequence
    • Source: insd
    • Created at NCBI: July 13, 2020

  • Host Taxonomy
    Assigned Host: Acinetobacter baumannii (470)
  • Biosample
    Accession: 15437745
  • GEOGRAPHICAL INFORMATION
    • Original Query: 56.1304N;106.3468W
    • Original Query Type: coordinates
    • Address: Unorganized Division No. 18, Saskatchewan, Canada
    • Coordinates (Lat/Lon): 56.13/-106.35
  • ECOSYSTEM
    • Original Query: Homo sapiens,sputum
    • Classification: host_associated,respiratory_system
    • Host-associated Taxon:
      • Homo sapiens (9606)
  • DISEASE
    • Original Query: Pneumoniae
    • DOID/SYMP:
      • Pneumonia (DOID:552 )
        • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.

    • Visualization

    PNG JSON



Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2