Plasmid NZ_CP154275.1

Sequence

Nucleotide Information

Accession NZ_CP154275.1
Description Klebsiella pneumoniae strain JXLV-KP54 plasmid p54-2, complete sequence
Source refseq
Topology circular
Length 116361 bp
GC Content 0.55 %
Created at NCBI May 8, 2024



Assembly

Genome Data Information

Accession GCF_039545765.1
Assembly Coverage 249


Biosample

Curated Collection Information
Accession 41075592

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Nanchang
Original Query Type name
Coordinates (Lat/Lon) 28.68/115.89
Address China,Nanchang

ECOSYSTEM
Original Query Homo sapiens,whole organism,sputum
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusmerTcopy
amrfinderplusmerCcopy
amrfinderplusblaKPC-2copy
amrfinderplusblaSHV-12copy
amrfinderplusblaCTX-M-65copy
PGAGIS6-like element IS26 family transposasecopy
PGAGtraUcopy
PGAGtraWcopy
PGAGtrbIcopy
PGAGtraCcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 159 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
mate-pair-formationNC_017639_00100MPF_F9471903minus98.746920605
mate-pair-formationNC_007675_00027MPF_F19032532minus99.048972.8999999999999996e-135425
mate-pair-formationNC_013437_00116MPF_T29185539minus90.5039901640
mate-pair-formationNC_017639_00094MPF_F60586570minus96.4911001.72e-97314
mate-pair-formationNC_019094_00090MPF_F76279021minus95.923960832
mate-pair-formationNC_010409_00124MPF_F90249749minus98.761004.19e-156486
mate-pair-formationNC_019037_00043MPF_F997010302minus97.297921.0300000000000001e-57198
mate-pair-formationNC_022651_00077MPF_F1032710635minus1001004.4e-63213
mate-pair-formationNC_022609_00068MPF_F4711047475minus99.18993.98e-65223
mate-pair-formationNC_014312_00116MPF_F4749847800minus1001004.22e-61207
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 15 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2