Plasmid NZ_CP152333.1

Sequence

Nucleotide Information

Accession NZ_CP152333.1
Description Klebsiella pneumoniae strain MRSN972117 plasmid p2_hvKp18, complete sequence
Source refseq
Topology circular
Length 113210 bp
GC Content 0.49 %
Created at NCBI May 1, 2024



Assembly

Genome Data Information

Accession GCF_038684765.1
Assembly Coverage 182


Biosample

Curated Collection Information
Accession 41018411

PLASMID INFORMATION
BIOSAMPLE_pathotype hvKp

GEOGRAPHICAL INFORMATION
Original Query 25.03N;121.56E
Original Query Type coordinates
Coordinates (Lat/Lon) 25.03/121.56
Address 15之1號, 吳興街118巷26弄, Jinglian Village, Xinyi District, Sanzhangli, Taipei, 110, Taiwan

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 65
Host-associated Sex male

DISEASE
Original Query necrotizing fasciitis-left leg,diabetes
DOID/SYMP
  • Diabetes mellitus (DOID:9351 )
    • A glucose metabolism disease that is characterized by chronic hyperglycaemia with disturbances of carbohydrate, fat and protein metabolism resulting from defects in insulin secretion, insulin action, or both.

Visualization

PNG JSON




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2