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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP151398.1
Sequence
Nucleotide Information
Accession
NZ_CP151398.1
Description
Shigella sonnei strain R15.0423 plasmid pR15.0423_4k, complete sequence
Source
refseq
Topology
circular
Length
4091 bp
GC Content
0.50 %
Created at NCBI
April 18, 2024
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Shigella sonnei (624)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Shigella (620)
Species
Shigella_sonnei (624)
Strain
Assembly
Genome Data Information
Accession
GCF_038367755.1
Assembly Coverage
100
Biosample
Curated Collection Information
Accession
39735790
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
None
Original Query Type
None
Coordinates (Lat/Lon)
Address
None
ECOSYSTEM
Original Query
None
Classification
None
Host-associated Taxon
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
Collapse all
Expand all
Plasmids from same Biosample
NZ_CP151402.1
NZ_CP151400.1
NZ_CP151397.1
NZ_CP151396.1
NZ_CP151394.1
NZ_CP151393.1
Similar Plasmids
based on Mash distance
NZ_CP060906.1
See Comparison
NZ_CP060889.1
See Comparison
NC_008487.1
See Comparison
NZ_CP038795.1
See Comparison
NZ_OY754461.1
See Comparison
NZ_CP146563.1
See Comparison
NZ_CP034387.1
See Comparison
CP058001.1
See Comparison
NZ_CP051333.1
See Comparison
NZ_CP117634.1
See Comparison
NZ_CP038795.1
See Comparison
NZ_CP116487.1
See Comparison
NZ_CP060912.1
See Comparison
NZ_CP101206.1
See Comparison
CP093115.1
See Comparison
NZ_CP060906.1
See Comparison
NZ_CP060889.1
See Comparison
NC_008487.1
See Comparison
NZ_CP117634.1
See Comparison
NZ_CP146563.1
See Comparison
NZ_CP034387.1
See Comparison
NZ_OY754461.1
See Comparison
CP058001.1
See Comparison
NZ_CP051333.1
See Comparison
NC_008487.1
See Comparison
NZ_CP116487.1
See Comparison
NZ_CP101206.1
See Comparison
CP093115.1
See Comparison
NZ_CP060889.1
See Comparison
NZ_CP060912.1
See Comparison
NZ_CP060906.1
See Comparison
NZ_CP038795.1
See Comparison
NZ_CP117634.1
See Comparison
NZ_OY754461.1
See Comparison
NZ_CP146563.1
See Comparison
NZ_CP034387.1
See Comparison
CP058001.1
See Comparison
NZ_CP051333.1
See Comparison
NZ_CP151398.1
See Comparison
NZ_CP116487.1
See Comparison
NZ_CP060912.1
See Comparison
NZ_CP060906.1
See Comparison
NC_008487.1
See Comparison
NZ_CP038795.1
See Comparison
NZ_CP101206.1
See Comparison
CP093115.1
See Comparison
NZ_CP060889.1
See Comparison
NZ_OY754461.1
See Comparison
CP058001.1
See Comparison
NZ_CP146563.1
See Comparison
NZ_CP051333.1
See Comparison
NZ_CP034387.1
See Comparison
NZ_CP116487.1
See Comparison
NZ_CP117634.1
See Comparison
NZ_CP038795.1
See Comparison
CP093115.1
See Comparison
NZ_CP101206.1
See Comparison
NZ_CP060912.1
See Comparison
NZ_CP060906.1
See Comparison
NZ_CP060889.1
See Comparison
NC_008487.1
See Comparison
NZ_CP146563.1
See Comparison
NZ_OY754461.1
See Comparison
CP058001.1
See Comparison
NZ_CP051333.1
See Comparison
NZ_CP034387.1
See Comparison
NZ_CP117634.1
See Comparison
NZ_CP116487.1
See Comparison
CP093115.1
See Comparison
NZ_CP101206.1
See Comparison
NZ_CP060912.1
See Comparison
NZ_CP060906.1
See Comparison
NZ_CP060889.1
See Comparison
NZ_OY754461.1
See Comparison
NC_008487.1
See Comparison
NZ_CP038795.1
See Comparison
CP058001.1
See Comparison
NZ_CP146563.1
See Comparison
NZ_CP034387.1
See Comparison
NZ_CP117634.1
See Comparison
NZ_CP101206.1
See Comparison
NZ_CP051333.1
See Comparison
NZ_CP116487.1
See Comparison
CP093115.1
See Comparison
NZ_CP060912.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore