Plasmid NZ_CP151398.1

Sequence

Nucleotide Information

Accession NZ_CP151398.1
Description Shigella sonnei strain R15.0423 plasmid pR15.0423_4k, complete sequence
Source refseq
Topology circular
Length 4091 bp
GC Content 0.50 %
Created at NCBI April 18, 2024



Assembly

Genome Data Information

Accession GCF_038367755.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 39735790

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query None
Original Query Type None
Coordinates (Lat/Lon)
Address None

ECOSYSTEM
Original Query None
Classification None
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP060906.1 See Comparison
NZ_CP060889.1 See Comparison
NC_008487.1 See Comparison
NZ_CP038795.1 See Comparison
NZ_OY754461.1 See Comparison
NZ_CP146563.1 See Comparison
NZ_CP034387.1 See Comparison
CP058001.1 See Comparison
NZ_CP051333.1 See Comparison
NZ_CP117634.1 See Comparison
NZ_CP038795.1 See Comparison
NZ_CP116487.1 See Comparison
NZ_CP060912.1 See Comparison
NZ_CP101206.1 See Comparison
CP093115.1 See Comparison
NZ_CP060906.1 See Comparison
NZ_CP060889.1 See Comparison
NC_008487.1 See Comparison
NZ_CP117634.1 See Comparison
NZ_CP146563.1 See Comparison
NZ_CP034387.1 See Comparison
NZ_OY754461.1 See Comparison
CP058001.1 See Comparison
NZ_CP051333.1 See Comparison
NC_008487.1 See Comparison
NZ_CP116487.1 See Comparison
NZ_CP101206.1 See Comparison
CP093115.1 See Comparison
NZ_CP060889.1 See Comparison
NZ_CP060912.1 See Comparison
NZ_CP060906.1 See Comparison
NZ_CP038795.1 See Comparison
NZ_CP117634.1 See Comparison
NZ_OY754461.1 See Comparison
NZ_CP146563.1 See Comparison
NZ_CP034387.1 See Comparison
CP058001.1 See Comparison
NZ_CP051333.1 See Comparison
NZ_CP151398.1 See Comparison
NZ_CP116487.1 See Comparison
NZ_CP060912.1 See Comparison
NZ_CP060906.1 See Comparison
NC_008487.1 See Comparison
NZ_CP038795.1 See Comparison
NZ_CP101206.1 See Comparison
CP093115.1 See Comparison
NZ_CP060889.1 See Comparison
NZ_OY754461.1 See Comparison
CP058001.1 See Comparison
NZ_CP146563.1 See Comparison
NZ_CP051333.1 See Comparison
NZ_CP034387.1 See Comparison
NZ_CP116487.1 See Comparison
NZ_CP117634.1 See Comparison
NZ_CP038795.1 See Comparison
CP093115.1 See Comparison
NZ_CP101206.1 See Comparison
NZ_CP060912.1 See Comparison
NZ_CP060906.1 See Comparison
NZ_CP060889.1 See Comparison
NC_008487.1 See Comparison
NZ_CP146563.1 See Comparison
NZ_OY754461.1 See Comparison
CP058001.1 See Comparison
NZ_CP051333.1 See Comparison
NZ_CP034387.1 See Comparison
NZ_CP117634.1 See Comparison
NZ_CP116487.1 See Comparison
CP093115.1 See Comparison
NZ_CP101206.1 See Comparison
NZ_CP060912.1 See Comparison
NZ_CP060906.1 See Comparison
NZ_CP060889.1 See Comparison
NZ_OY754461.1 See Comparison
NC_008487.1 See Comparison
NZ_CP038795.1 See Comparison
CP058001.1 See Comparison
NZ_CP146563.1 See Comparison
NZ_CP034387.1 See Comparison
NZ_CP117634.1 See Comparison
NZ_CP101206.1 See Comparison
NZ_CP051333.1 See Comparison
NZ_CP116487.1 See Comparison
CP093115.1 See Comparison
NZ_CP060912.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore