Plasmid NZ_CP151197.1
Sequence
Nucleotide Information
| Accession | NZ_CP151197.1 |
|---|---|
| Description | Klebsiella variicola strain KVTMDU plasmid p10KVTMDU, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 5665 bp |
| GC Content | 0.49 % |
| Created at NCBI | April 17, 2024 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella variicola (244366) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_variicola (244366) |
| Strain |
Biosample
Curated Collection Information
| Accession | 23446385 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 35.7014N;139.7642E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 35.70/139.76 |
| Address | ヒポクラテス, Sotobori-dori Avenue, Yushima 1-chome, Bunkyō, Tokyo, 113-8519, Japan |
ECOSYSTEM
| Original Query | sewage |
|---|---|
| Classification | sewage,wastewater |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | MobC family plasmid mobilization relaxosome protein | copy | ||
| PGAG | MbeB family mobilization protein | copy | ||
| PGAG | MbeD family mobilization/exclusion protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | PmeII family type II restriction endonuclease | copy | ||
| PGAG | site-specific DNA-methyltransferase | copy | ||
| PGAG | replication initiation protein | copy | ||
| MOB-typer | MOBP | copy | ||
| MOB-typer | ColRNAI_rep_cluster_1987 | copy | ||
| MOB-typer | MOBP | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 10 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | HQ328804 | MOBP | 5488 | 5664 | plus | 81.667 | 100 | 2.75e-31 | 141 |
| relaxase | NC_019986_00002 | MOBP | 415 | 1938 | plus | 100 | 100 | 0 | 1014 |
| replicon | CP041116_00002 | ColRNAI_rep_cluster_1987 | 5032 | 5537 | minus | 90.551 | 97 | 0 | 664 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 3 of 3 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |