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v. 2024_05_31_v2
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Antimicrobial Resistance Genes
Typing
Plasmid NZ_CP149580.1
Sequence
Nucleotide Information
Accession
NZ_CP149580.1
Description
Klebsiella pneumoniae strain 2024CK-00065 plasmid unnamed1, complete sequence
Source
refseq
Topology
circular
Length
112409 bp
GC Content
0.52 %
Created at NCBI
April 5, 2024
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Klebsiella pneumoniae (573)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Klebsiella (570)
Species
Klebsiella_pneumoniae (573)
Strain
Assembly
Genome Data Information
Accession
GCF_037890715.1
Assembly Coverage
50
Biosample
Curated Collection Information
Accession
39595402
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
USA
Original Query Type
name
Coordinates (Lat/Lon)
39.78/-100.45
Address
USA
ECOSYSTEM
Original Query
Homo sapiens,Wound/Abscess
Classification
abscess,host_associated,wound
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_CP149584.1
NZ_CP149582.1
NZ_CP149581.1
Similar Plasmids
based on Mash distance
NZ_CP104372.1
See Comparison
NZ_CP104374.1
See Comparison
NZ_CP009115.1
See Comparison
NZ_CP104372.1
See Comparison
NZ_CP150002.1
See Comparison
NZ_CP104680.1
See Comparison
NZ_CP104662.1
See Comparison
NZ_CP104374.1
See Comparison
NZ_CP009115.1
See Comparison
NZ_CP104680.1
See Comparison
NZ_CP150002.1
See Comparison
NZ_CP104372.1
See Comparison
NZ_CP104662.1
See Comparison
NZ_CP104680.1
See Comparison
NZ_CP104374.1
See Comparison
NZ_CP009115.1
See Comparison
NZ_CP150002.1
See Comparison
NZ_CP104662.1
See Comparison
NZ_CP104372.1
See Comparison
NZ_CP009115.1
See Comparison
NZ_CP104374.1
See Comparison
NZ_CP150002.1
See Comparison
NZ_CP104680.1
See Comparison
NZ_CP104662.1
See Comparison
NZ_CP009115.1
See Comparison
NZ_CP104372.1
See Comparison
NZ_CP104374.1
See Comparison
NZ_CP009115.1
See Comparison
NZ_CP150002.1
See Comparison
NZ_CP104680.1
See Comparison
NZ_CP104662.1
See Comparison
NZ_CP104372.1
See Comparison
NZ_CP104374.1
See Comparison
NZ_CP104662.1
See Comparison
NZ_CP149580.1
See Comparison
NZ_CP150002.1
See Comparison
NZ_CP104680.1
See Comparison
Identical Plasmids
100% Sequence Identity
NZ_CP104372.1
Sequence
Accession
:
NZ_CP104372.1
Description
: Escherichia coli strain 2021CK-01784 plasmid unnamed1, complete sequence
Source
: refseq
Created at NCBI
: Sept. 21, 2022
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
24145077
GEOGRAPHICAL INFORMATION
Original Query
: USA
Original Query Type
: name
Address
: USA
Coordinates
(Lat/Lon): 39.78/-100.45
ECOSYSTEM
Original Query
: Homo sapiens,Rectal Swab
Classification
: gastrointestinal_system,host_associated,rectal
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
NZ_CP104374.1
Sequence
Accession
:
NZ_CP104374.1
Description
: Klebsiella pneumoniae strain 2021CK-01815 plasmid unnamed1, complete sequence
Source
: refseq
Created at NCBI
: Sept. 21, 2022
Host Taxonomy
Assigned Host
:
Klebsiella pneumoniae (573)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Klebsiella (570)
Species
:
Klebsiella_pneumoniae (573)
Strain
:
Biosample
Accession
:
24523856
GEOGRAPHICAL INFORMATION
Original Query
: USA
Original Query Type
: name
Address
: USA
Coordinates
(Lat/Lon): 39.78/-100.45
ECOSYSTEM
Original Query
: Homo sapiens,Wound/Abscess
Classification
: abscess,host_associated,wound
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
NZ_CP150002.1
Sequence
Accession
:
NZ_CP150002.1
Description
: Klebsiella pneumoniae strain 2023CK-01686 plasmid unnamed2, complete sequence
Source
: refseq
Created at NCBI
: March 25, 2024
Host Taxonomy
Assigned Host
:
Klebsiella pneumoniae (573)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Klebsiella (570)
Species
:
Klebsiella_pneumoniae (573)
Strain
:
Biosample
Accession
:
39334901
GEOGRAPHICAL INFORMATION
Original Query
: USA
Original Query Type
: name
Address
: USA
Coordinates
(Lat/Lon): 39.78/-100.45
ECOSYSTEM
Original Query
: Homo sapiens
Classification
: host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore