Plasmid NZ_CP149374.1

Sequence

Nucleotide Information

Accession	NZ_CP149374.1
Description	Salmonella enterica subsp. enterica serovar Typhimurium strain Z1323HSL0038 plasmid pZ1323HSL0038-4, complete sequence
Source	refseq
Topology	circular
Length	58545 bp
GC Content	0.42 %
Created at NCBI	April 5, 2024

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Salmonella enterica (90371)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Salmonella (590)
Species	Salmonella_enterica (28901)
Strain

Assembly

Genome Data Information

Accession	GCF_037882525.1
Assembly Coverage	114

Biosample

Curated Collection Information

Accession	40439949

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	South Korea
Original Query Type	name
Coordinates (Lat/Lon)	36.56/127.94
Address	South Korea

ECOSYSTEM

Original Query	Homo sapiens,single cell
Classification	cell_culture,host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP148364.1	See Comparison
NZ_CP149374.1	See Comparison
NZ_CP148364.1	See Comparison
NZ_CP148364.1	See Comparison
NZ_CP148364.1	See Comparison
NZ_CP148364.1	See Comparison
NZ_CP148364.1	See Comparison
NZ_CP148364.1	See Comparison

Plasmid Visualization

Grays

Blues

Purples

Reds

Oranges

Greens

100

Hex

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B

Search:

Source	Element Name	Display	Sequence	Favorite

PGAG	type IV secretory system conjugative DNA transfer family protein		copy
PGAG	sigma 54-interacting transcriptional regulator		copy
PGAG	PilN family type IVB pilus formation outer membrane protein		copy
PGAG	pilO2		copy
PGAG	pilP		copy
PGAG	ATPase, T2SS/T4P/T4SS family		copy
PGAG	type II secretion system F family protein		copy
PGAG	type 4 pilus major pilin		copy
PGAG	lytic transglycosylase domain-containing protein		copy
PGAG	A24 family peptidase		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 77 entries

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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

replicon	KY693674	IncI2	37768	38784	minus	100	100	0	1879
relaxase	NC_022520_00030	MOBP	20389	24627	minus	97.24	100	0	2743
mate-pair-formation	NC_019039_00065	MPF_T	43908	44900	plus	86.707	100	1.81e-155	489
mate-pair-formation	NC_020270_00063	MPF_T	50655	53009	plus	99.363	100	0	1563
mate-pair-formation	NC_019039_00052	MPF_T	53178	53909	plus	99.59	100	4.55e-147	460
mate-pair-formation	NC_019039_00051	MPF_T	53909	54676	plus	100	100	9.85e-173	534
mate-pair-formation	NC_020270_00058	MPF_T	56898	58544	plus	99.818	99	0	1050
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 7 of 7 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2