Plasmid NZ_CP149366.1

Sequence

Nucleotide Information

Accession NZ_CP149366.1
Description Salmonella enterica subsp. enterica serovar Typhimurium strain Z1323HSL0048 plasmid pZ1323HSL0048-2, complete sequence
Source refseq
Topology circular
Length 98952 bp
GC Content 0.50 %
Created at NCBI April 5, 2024



Assembly

Genome Data Information

Accession GCF_037876785.1
Assembly Coverage 111


Biosample

Curated Collection Information
Accession 40439951

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query South Korea
Original Query Type name
Coordinates (Lat/Lon) 36.56/127.94
Address South Korea

ECOSYSTEM
Original Query Homo sapiens,single cell
Classification cell_culture,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
PGAGrepAcopy
PGAGyacAcopy
PGAGhypothetical proteincopy
PGAGIS6-like element IS26 family transposasecopy
PGAGmetalloregulator ArsR/SmtB family transcription factorcopy
PGAGpermeasecopy
PGAGProQ/FINO family proteincopy
PGAGAAA family ATPasecopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 113 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconCP001118IncI-gamma/K1461077plus10010001906
relaxaseNC_019097MOBP4487647569plus95.3239901684
oriTNC_004960MOBP4441444506minus1001004.37e-41172
mate-pair-formationNC_019097_00056MPF_I4764249903minus98.5419201442
mate-pair-formationNC_022267_00057MPF_I5834759546minus97.251000751
mate-pair-formationNC_019111_00038MPF_I6432464701minus100942.5999999999999997e-47169
mate-pair-formationNC_023290_00086MPF_I6475565279minus99.4291003.4000000000000003e-100322
mate-pair-formationNC_015965_00072MPF_I6528265983minus98.7181006.46e-152473
mate-pair-formationNC_019097_00075MPF_I6727868258minus99.6941000657
mate-pair-formationNC_022267_00069MPF_I6831468961minus99.074915.71e-143448
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 12 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2