Plasmid NZ_CP149261.1

Sequence

Nucleotide Information

Accession NZ_CP149261.1
Description Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain Z1322HSL0042 plasmid pZ1322HSL0042-5, complete sequence
Source refseq
Topology circular
Length 1888 bp
GC Content 0.51 %
Created at NCBI April 23, 2024



Biosample

Curated Collection Information
Accession 40440209

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query South Korea
Original Query Type name
Coordinates (Lat/Lon) 36.56/127.94
Address South Korea

ECOSYSTEM
Original Query Homo sapiens,single cell
Classification cell_culture,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP125356.1 See Comparison
NZ_CP149232.1 See Comparison
NZ_CP149274.1 See Comparison
NZ_CP149282.1 See Comparison
CP056482.1 See Comparison
NZ_CP125356.1 See Comparison
CP082414.1 See Comparison
NZ_CP125356.1 See Comparison
NZ_CP149274.1 See Comparison
NZ_CP149282.1 See Comparison
NZ_CP117701.1 See Comparison
NZ_CP117697.1 See Comparison
NZ_CP117695.1 See Comparison
NZ_CP117701.1 See Comparison
NZ_CP117697.1 See Comparison
NZ_CP117695.1 See Comparison
NZ_CP044965.1 See Comparison
NZ_CP149232.1 See Comparison
CP056482.1 See Comparison
CP082414.1 See Comparison
NZ_CP044965.1 See Comparison
NZ_CP149232.1 See Comparison
NZ_CP149274.1 See Comparison
CP056482.1 See Comparison
NZ_CP149282.1 See Comparison
CP082414.1 See Comparison
NZ_CP149282.1 See Comparison
CP056482.1 See Comparison
NZ_CP117701.1 See Comparison
NZ_CP117697.1 See Comparison
NZ_CP117695.1 See Comparison
NZ_CP044965.1 See Comparison
NZ_CP125356.1 See Comparison
NZ_CP149232.1 See Comparison
NZ_CP149274.1 See Comparison
NZ_CP149282.1 See Comparison
NZ_CP044965.1 See Comparison
NZ_CP117701.1 See Comparison
NZ_CP117697.1 See Comparison
NZ_CP117695.1 See Comparison
CP082414.1 See Comparison
NZ_CP125356.1 See Comparison
NZ_CP149232.1 See Comparison
NZ_CP149274.1 See Comparison
NZ_CP149261.1 See Comparison
CP056482.1 See Comparison
NZ_CP117701.1 See Comparison
NZ_CP117697.1 See Comparison
NZ_CP117695.1 See Comparison
NZ_CP044965.1 See Comparison
NZ_CP125356.1 See Comparison
CP056482.1 See Comparison
NZ_CP117701.1 See Comparison
NZ_CP117697.1 See Comparison
NZ_CP117695.1 See Comparison
CP082414.1 See Comparison
CP082414.1 See Comparison
NZ_CP149232.1 See Comparison
NZ_CP149274.1 See Comparison
NZ_CP149282.1 See Comparison
NZ_CP044965.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore