Plasmid NZ_CP148793.1

Sequence

Nucleotide Information

Accession NZ_CP148793.1
Description Salmonella enterica subsp. enterica serovar Infantis strain Z1323HSL0039 plasmid pZ1323HSL0039-4, complete sequence
Source refseq
Topology circular
Length 4903 bp
GC Content 0.46 %
Created at NCBI April 5, 2024



Assembly

Genome Data Information

Accession GCF_037771175.1
Assembly Coverage 126


Biosample

Curated Collection Information
Accession 40424072

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query South Korea
Original Query Type name
Coordinates (Lat/Lon) 36.56/127.94
Address South Korea

ECOSYSTEM
Original Query Homo sapiens,single cell
Classification cell_culture,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP148843.1 See Comparison
NZ_CP148809.1 See Comparison
NZ_CP148813.1 See Comparison
NZ_CP148800.1 See Comparison
NZ_CP148821.1 See Comparison
NZ_CP148817.1 See Comparison
NZ_CP148805.1 See Comparison
NZ_CP148835.1 See Comparison
NZ_CP148849.1 See Comparison
NZ_CP148825.1 See Comparison
NZ_CP148831.1 See Comparison
CP148863.1 See Comparison
CP148786.1 See Comparison
NZ_CP148843.1 See Comparison
NZ_CP148813.1 See Comparison
NZ_CP148800.1 See Comparison
NZ_CP148821.1 See Comparison
NZ_CP148817.1 See Comparison
NZ_CP148805.1 See Comparison
NZ_CP148835.1 See Comparison
NZ_CP148849.1 See Comparison
NZ_CP148825.1 See Comparison
NZ_CP148831.1 See Comparison
CP148889.1 See Comparison
CP148863.1 See Comparison
CP148786.1 See Comparison
CP148889.1 See Comparison
NZ_CP148843.1 See Comparison
NZ_CP148809.1 See Comparison
NZ_CP148809.1 See Comparison
NZ_CP148813.1 See Comparison
NZ_CP148813.1 See Comparison
NZ_CP148800.1 See Comparison
NZ_CP148821.1 See Comparison
NZ_CP148817.1 See Comparison
NZ_CP148805.1 See Comparison
NZ_CP148835.1 See Comparison
NZ_CP148849.1 See Comparison
NZ_CP148825.1 See Comparison
NZ_CP148831.1 See Comparison
CP148889.1 See Comparison
CP148863.1 See Comparison
CP148786.1 See Comparison
NZ_CP148843.1 See Comparison
NZ_CP148809.1 See Comparison
NZ_CP148800.1 See Comparison
NZ_CP148821.1 See Comparison
NZ_CP148817.1 See Comparison
NZ_CP148805.1 See Comparison
NZ_CP148835.1 See Comparison
NZ_CP148849.1 See Comparison
NZ_CP148825.1 See Comparison
NZ_CP148831.1 See Comparison
NZ_CP148843.1 See Comparison
CP148889.1 See Comparison
CP148863.1 See Comparison
CP148786.1 See Comparison
NZ_CP148809.1 See Comparison
NZ_CP148813.1 See Comparison
NZ_CP148800.1 See Comparison
NZ_CP148821.1 See Comparison
NZ_CP148817.1 See Comparison
NZ_CP148805.1 See Comparison
NZ_CP148835.1 See Comparison
NZ_CP148849.1 See Comparison
NZ_CP148825.1 See Comparison
NZ_CP148831.1 See Comparison
CP148889.1 See Comparison
CP148863.1 See Comparison
CP148786.1 See Comparison
NZ_CP148843.1 See Comparison
NZ_CP148809.1 See Comparison
NZ_CP148831.1 See Comparison
CP148889.1 See Comparison
CP148863.1 See Comparison
CP148786.1 See Comparison
NZ_CP148813.1 See Comparison
NZ_CP148800.1 See Comparison
NZ_CP148821.1 See Comparison
NZ_CP148793.1 See Comparison
NZ_CP148817.1 See Comparison
NZ_CP148805.1 See Comparison
NZ_CP148835.1 See Comparison
NZ_CP148849.1 See Comparison
NZ_CP148825.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore