Plasmid NZ_CP148504.1

Sequence

Nucleotide Information

Accession NZ_CP148504.1
Description Escherichia coli strain Z1323CEC0002 plasmid pZ1323CEC0002-7, complete sequence
Source refseq
Topology circular
Length 2089 bp
GC Content 0.47 %
Created at NCBI April 15, 2024



Biosample

Curated Collection Information
Accession 40441569

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query South Korea
Original Query Type name
Coordinates (Lat/Lon) 36.56/127.94
Address South Korea

ECOSYSTEM
Original Query Chicken,single cell
Classification cell_culture,host_associated
Host-associated Taxon
  • Gallus gallus (9031)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP104515.1 See Comparison
NZ_CP103625.1 See Comparison
NZ_CP103476.1 See Comparison
NZ_CP054163.1 See Comparison
NZ_CP085067.1 See Comparison
CP077227.1 See Comparison
NZ_CP030115.1 See Comparison
NZ_CP151675.1 See Comparison
NZ_CP149331.1 See Comparison
NZ_CP148490.1 See Comparison
NZ_CP148415.1 See Comparison
NZ_CP148452.1 See Comparison
NZ_CP145654.1 See Comparison
NZ_CP140509.1 See Comparison
CP056791.1 See Comparison
NZ_CP149331.1 See Comparison
NZ_CP054163.1 See Comparison
NZ_CP048366.1 See Comparison
NZ_LR890540.1 See Comparison
NZ_CP104515.1 See Comparison
NZ_CP103625.1 See Comparison
NZ_CP103476.1 See Comparison
NZ_CP085067.1 See Comparison
CP077227.1 See Comparison
NZ_CP030115.1 See Comparison
NZ_CP151675.1 See Comparison
NZ_CP148490.1 See Comparison
NZ_CP148415.1 See Comparison
NZ_CP148452.1 See Comparison
NZ_CP145654.1 See Comparison
CP056791.1 See Comparison
NZ_CP140509.1 See Comparison
NZ_LR890540.1 See Comparison
NZ_CP048366.1 See Comparison
NZ_CP104515.1 See Comparison
NZ_CP103476.1 See Comparison
NZ_CP054163.1 See Comparison
NZ_CP103625.1 See Comparison
CP077227.1 See Comparison
NZ_CP085067.1 See Comparison
NZ_CP030115.1 See Comparison
NZ_CP148415.1 See Comparison
NZ_CP151675.1 See Comparison
NZ_CP149331.1 See Comparison
NZ_CP148490.1 See Comparison
NZ_CP148504.1 See Comparison
NZ_CP148452.1 See Comparison
NZ_CP145654.1 See Comparison
NZ_CP048366.1 See Comparison
CP056791.1 See Comparison
NZ_CP140509.1 See Comparison
NZ_LR890540.1 See Comparison
NZ_CP103625.1 See Comparison
NZ_CP104515.1 See Comparison
NZ_CP103476.1 See Comparison
CP077227.1 See Comparison
NZ_CP054163.1 See Comparison
NZ_CP085067.1 See Comparison
CP077227.1 See Comparison
NZ_CP030115.1 See Comparison
NZ_CP151675.1 See Comparison
NZ_CP148415.1 See Comparison
NZ_CP148452.1 See Comparison
NZ_CP145654.1 See Comparison
NZ_CP140509.1 See Comparison
CP056791.1 See Comparison
NZ_CP048366.1 See Comparison
NZ_CP104515.1 See Comparison
NZ_CP103625.1 See Comparison
NZ_CP103476.1 See Comparison
NZ_CP054163.1 See Comparison
NZ_CP149331.1 See Comparison
NZ_CP148490.1 See Comparison
NZ_LR890540.1 See Comparison
NZ_CP085067.1 See Comparison
NZ_CP085067.1 See Comparison
NZ_CP151675.1 See Comparison
NZ_CP149331.1 See Comparison
NZ_CP148490.1 See Comparison
NZ_CP145654.1 See Comparison
NZ_CP140509.1 See Comparison
NZ_CP103625.1 See Comparison
NZ_CP103476.1 See Comparison
NZ_CP054163.1 See Comparison
NZ_CP030115.1 See Comparison
NZ_CP148415.1 See Comparison
NZ_CP148452.1 See Comparison
CP056791.1 See Comparison
NZ_CP048366.1 See Comparison
NZ_LR890540.1 See Comparison
NZ_CP104515.1 See Comparison
CP077227.1 See Comparison
NZ_CP140509.1 See Comparison
NZ_CP030115.1 See Comparison
NZ_CP149331.1 See Comparison
NZ_CP148490.1 See Comparison
NZ_CP148415.1 See Comparison
NZ_CP148452.1 See Comparison
NZ_CP145654.1 See Comparison
NZ_CP151675.1 See Comparison
NZ_CP148415.1 See Comparison
NZ_CP085067.1 See Comparison
CP077227.1 See Comparison
NZ_CP030115.1 See Comparison
CP056791.1 See Comparison
NZ_CP048366.1 See Comparison
NZ_LR890540.1 See Comparison
NZ_CP104515.1 See Comparison
NZ_CP103625.1 See Comparison
NZ_CP103476.1 See Comparison
NZ_CP054163.1 See Comparison
NZ_CP151675.1 See Comparison
NZ_CP149331.1 See Comparison
NZ_CP148490.1 See Comparison
NZ_CP148452.1 See Comparison
NZ_CP145654.1 See Comparison
CP056791.1 See Comparison
NZ_CP140509.1 See Comparison
NZ_LR890540.1 See Comparison
NZ_CP048366.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2