Plasmid NZ_CP148484.1

Sequence

Nucleotide Information

Accession NZ_CP148484.1
Description Escherichia coli strain Z1323CEC0004 plasmid pZ1323CEC0004-2, complete sequence
Source refseq
Topology circular
Length 101383 bp
GC Content 0.51 %
Created at NCBI April 15, 2024



Biosample

Curated Collection Information
Accession 40441571

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query South Korea
Original Query Type name
Coordinates (Lat/Lon) 36.56/127.94
Address South Korea

ECOSYSTEM
Original Query Chicken,single cell
Classification cell_culture,host_associated
Host-associated Taxon
  • Gallus gallus (9031)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblecopy
rgiBLMTcopy
rgiAPH(6)-Iccopy
amrfinderplusaph(3')-IIacopy
amrfinderplusaph(6)-Iccopy
PGAGreplication protein RepAcopy
PGAGrepAcopy
PGAGribbon-helix-helix protein, CopG familycopy
PGAGtype II toxin-antitoxin system RelE/ParE family toxincopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 130 entries
…



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
Loading...
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
Loading...
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
Loading...
NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000136__AP014877_00014IncFIA1858plus95.68810001380
repliconAJ851089IncFII101125101383minus95.367993.0199999999999997e-112411
relaxaseNC_017627_00068MOBF8910594372plus97.09610003343
oriTCP010020MOBF5538355672plus99.311001.16e-146525
mate-pair-formationNC_022651_00077MPF_F5791058218plus100994.03e-63213
mate-pair-formationNC_010409_00124MPF_F5879659521plus98.761004.19e-156486
mate-pair-formationNC_019094_00090MPF_F5952460933plus96.603970850
mate-pair-formationNC_017639_00094MPF_F6207962591plus92.3981001.09e-90295
mate-pair-formationNC_013437_00116MPF_T6557668191plus90.5969901636
mate-pair-formationNC_007675_00027MPF_F6857769206plus97.143976.34e-133418
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 16 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
Loading...
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2