Plasmid NZ_CP147836.1
Sequence
Nucleotide Information
| Accession | NZ_CP147836.1 |
|---|---|
| Description | Klebsiella pneumoniae strain 130120D plasmid pKPC84_130120D, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 9763 bp |
| GC Content | 0.52 % |
| Created at NCBI | April 5, 2024 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 40411204 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | China,Chengdu,Sichuan |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 30.64/104.07 |
| Address | China,Chengdu,Sichuan |
ECOSYSTEM
| Original Query | pure culture,experimental |
|---|---|
| Classification | cell_culture |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Plasmids from same Biosample
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | IS6-like element IS26 family transposase | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | traX | copy | ||
| PGAG | fertility inhibition protein FinO | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | PIN domain-containing protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | Hok/Gef family protein | copy | ||
| PGAG | replication regulatory protein RepA | copy | ||
| PGAG | tap | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 15 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | MH263653_00001 | IncFIA | 5307 | 6062 | plus | 100 | 100 | 0 | 1397 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 1 of 1 entry
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |