Plasmid NZ_CP147744.1

Sequence

Nucleotide Information

Accession NZ_CP147744.1
Description Klebsiella pneumoniae strain 20200219S1 plasmid unnamed3, complete sequence
Source refseq
Topology circular
Length 133695 bp
GC Content 0.53 %
Created at NCBI April 5, 2024



Biosample

Curated Collection Information
Accession 40242869

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 37.27N;113.31E
Original Query Type coordinates
Coordinates (Lat/Lon) 37.27/113.31
Address Xigoucun, Jinzhong, Shanxi, China

ECOSYSTEM
Original Query Homo sapiens,bone marrow
Classification host_associated,lymphatic_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query osteoarthritis
DOID/SYMP
  • Osteoarthritis (DOID:8398 )
    • An arthritis that has_material_basis_in worn out cartilage located_in joint.
    • Has_material_basis_in: ['worn out cartilage located_in joint']

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore