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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP147570.1
Sequence
Nucleotide Information
Accession
NZ_CP147570.1
Description
Escherichia coli strain GN02100 plasmid unnamed3, complete sequence
Source
refseq
Topology
circular
Length
4109 bp
GC Content
0.50 %
Created at NCBI
April 5, 2024
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCF_037277815.1
Assembly Coverage
100
Biosample
Curated Collection Information
Accession
40123764
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
36.0070N;78.9371W
Original Query Type
coordinates
Coordinates (Lat/Lon)
36.01/-78.94
Address
Duke University Hospital, 2301, Erwin Road, Crest Street, Durham, Durham County, North Carolina, 27710, United States
ECOSYSTEM
Original Query
Homo sapiens,bloodstream
Classification
blood,circulatory_system,host_associated
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
bacterial infectious disease
DOID/SYMP
Bacterial infectious disease
(
DOID:104
)
A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
Has_material_basis_in: ['bacteria']
Visualization
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Plasmids from same Biosample
NZ_CP147569.1
Similar Plasmids
based on Mash distance
CP082592.1
See Comparison
CP082683.1
See Comparison
NZ_CP032071.1
See Comparison
NZ_CP103547.1
See Comparison
NZ_CP054359.1
See Comparison
NZ_OY754405.1
See Comparison
NZ_CP032071.1
See Comparison
CP082592.1
See Comparison
CP082683.1
See Comparison
NZ_CP054359.1
See Comparison
NZ_OY754405.1
See Comparison
NZ_CP032071.1
See Comparison
NZ_CP103547.1
See Comparison
CP082592.1
See Comparison
CP082683.1
See Comparison
NZ_CP147570.1
See Comparison
NZ_OY754405.1
See Comparison
NZ_CP054359.1
See Comparison
CP082592.1
See Comparison
NZ_CP103547.1
See Comparison
CP082683.1
See Comparison
NZ_CP032071.1
See Comparison
NZ_CP103547.1
See Comparison
NZ_CP054359.1
See Comparison
NZ_OY754405.1
See Comparison
CP082592.1
See Comparison
CP082683.1
See Comparison
NZ_CP032071.1
See Comparison
CP082592.1
See Comparison
NZ_OY754405.1
See Comparison
NZ_CP054359.1
See Comparison
NZ_CP103547.1
See Comparison
CP082683.1
See Comparison
NZ_CP103547.1
See Comparison
NZ_CP032071.1
See Comparison
NZ_OY754405.1
See Comparison
NZ_CP054359.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
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NUCCORE ACC
Source
Element Name
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Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore