Plasmid NZ_CP146295.1

Sequence

Nucleotide Information

Accession	NZ_CP146295.1
Description	Shigella sonnei strain R16.0823 plasmid unnamed1, complete sequence
Source	refseq
Topology	circular
Length	107673 bp
GC Content	0.53 %
Created at NCBI	April 5, 2024

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Shigella sonnei (624)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Shigella (620)
Species	Shigella_sonnei (624)
Strain

Biosample

Curated Collection Information

Accession	40123227

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	None
Original Query Type	None
Coordinates (Lat/Lon)
Address	None

ECOSYSTEM

Original Query	None
Classification	None
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP151365.1	See Comparison
NZ_CP151365.1	See Comparison
NZ_CP151365.1	See Comparison
NZ_CP151365.1	See Comparison
NZ_CP151365.1	See Comparison
NZ_CP151365.1	See Comparison
NZ_CP146295.1	See Comparison
NZ_CP151365.1	See Comparison

Plasmid Visualization

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Greens

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Hex

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B

Search:

Source	Element Name	Display	Sequence	Favorite

amrfinderplus	aadA5		copy
rgi	mphA		copy
rgi	dfrA17		copy
amrfinderplus	dfrA17		copy
amrfinderplus	sul1		copy
amrfinderplus	mph(A)		copy
rgi	Mrx		copy
amrfinderplus	qacEdelta1		copy
amrfinderplus	blaCTX-M-14		copy
PGAG	repA		copy
Source	Element Name	Display	Sequence	Favorite

Showing 1 to 10 of 140 entries

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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

Search:

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

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NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

Search:

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

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NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

Search:

NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

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NUCCORE ACC	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Name	Mash Neighbor Distance	Reported Host Range Lit Rank

BLAST results of detected typing markers by MOB-type

Search:

biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

relaxase	NC_013728_00087	MOBP	46109	48817	plus	90.397	100	0	1629
replicon	KR905388	IncK2/Z	1	873	plus	98.625	100	0	1546
oriT	AB290882	MOBP	45665	45764	plus	98	100	1.35e-41	174
mate-pair-formation	NC_011754_00087	MPF_I	50117	52417	minus	99.348	100	0	1428
mate-pair-formation	NC_014843_00047	MPF_I	64691	65893	minus	100	100	0	733
mate-pair-formation	NC_007365_00035	MPF_I	70854	71204	minus	89.744	89	2.25e-51	181
mate-pair-formation	NC_011754_00109	MPF_I	71299	71826	minus	99.432	100	1.56e-100	323
mate-pair-formation	NC_014843_00041	MPF_I	71826	72536	minus	97.89	100	1.08e-152	476
mate-pair-formation	NC_022371_00084	MPF_I	73877	74848	minus	99.383	100	0	580
mate-pair-formation	NC_012487_00131	MPF_I	74862	75554	minus	99.567	100	1.17e-152	476
biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Showing 1 to 10 of 12 entries

Detected typing markers by plasmidfinder

Search:

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2

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NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	Organism L1	Organism L2